Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0450
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   4.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   6.2  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 216 GGKSSNGGHGWVQGAWGVL 272
           GG ++NG  G   G WG L
Sbjct: 187 GGNNNNGTPGGHSGFWGQL 205


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 220 PPHLASLARQMYIVLTYLYCVYRLRTIITNQSSRNRSMKLNNSETVS 80
           P HL S+ARQ+ + + +L    + R +  + ++RN  +  N++  VS
Sbjct: 591 PKHLLSIARQVALGMEHL---AKTRVVHRDLAARNVLVCENHTVKVS 634


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 292 VVSPPGWRTPHAPCTHPWPP 233
           ++SP G  TP+   T P+PP
Sbjct: 57  LLSPSG-NTPNKSSTSPYPP 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,074
Number of Sequences: 336
Number of extensions: 3929
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)