Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0450
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 24/92 (26%), Positives = 33/92 (35%)
 Frame = -2

Query: 346 HNAVLRLPHPTTSRRAH*VVSPPGWRTPHAPCTHPWPPFEDFPPHLASLARQMYIVLTYL 167
           H++    PH   S        P   +  H P  HP PP    P     L    +     L
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGPQVETILQNACFCARNEL 492

Query: 166 YCVYRLRTIITNQSSRNRSMKLNNSETVSRKF 71
             + +   IIT+Q    +S +LN   T   KF
Sbjct: 493 MMILKEIKIITDQL---KSEELNAKVTNDWKF 521


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 610 GTLRSTLK*FKSISVTKAPEYLIDSGRDESERY 708
           GTL +T+          AP++LI  G+D ++ Y
Sbjct: 365 GTLENTINGRADEEAAPAPQHLIHPGKDINKLY 397


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 610 GTLRSTLK*FKSISVTKAPEYLIDSGRDESERY 708
           GTL +T+          AP++LI  G+D ++ Y
Sbjct: 365 GTLENTINGRADEEAAPAPQHLIHPGKDINKLY 397


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 610 GTLRSTLK*FKSISVTKAPEYLIDSGRDESERY 708
           GTL +T+          AP++LI  G+D ++ Y
Sbjct: 303 GTLENTINGRADEEAAPAPQHLIHPGKDINKLY 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,257
Number of Sequences: 438
Number of extensions: 5549
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)