Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0449
(791 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 259 1e-69
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 259 1e-69
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 259 1e-69
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 58 5e-09
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 44 1e-04
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 44 1e-04
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 44 2e-04
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 44 2e-04
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 44 2e-04
At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) / 1,4-alp... 31 0.88
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 31 0.88
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 2.0
At4g34340.1 68417.m04880 expressed protein 29 3.5
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ... 28 6.2
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 28 6.2
At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00... 28 8.2
At2g02650.1 68415.m00204 reverse transcriptase-related similar t... 28 8.2
At1g63110.3 68414.m07131 cell division cycle protein-related con... 28 8.2
At1g63110.2 68414.m07132 cell division cycle protein-related con... 28 8.2
At1g63110.1 68414.m07130 cell division cycle protein-related con... 28 8.2
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 259 bits (635), Expect = 1e-69
Identities = 130/195 (66%), Positives = 150/195 (76%), Gaps = 2/195 (1%)
Frame = +3
Query: 213 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 386
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 387 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 566
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214
Query: 567 VDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 746
VDLLAPY TVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY E
Sbjct: 215 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 274
Query: 747 MIESGVISLKDKTSK 791
MIESGVI L +K S+
Sbjct: 275 MIESGVIKLGEKQSE 289
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 259 bits (635), Expect = 1e-69
Identities = 130/195 (66%), Positives = 150/195 (76%), Gaps = 2/195 (1%)
Frame = +3
Query: 213 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 386
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 157
Query: 387 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 566
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 158 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 217
Query: 567 VDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 746
VDLLAPY TVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY E
Sbjct: 218 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 277
Query: 747 MIESGVISLKDKTSK 791
MIESGVI L +K S+
Sbjct: 278 MIESGVIKLGEKQSE 292
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 259 bits (635), Expect = 1e-69
Identities = 130/195 (66%), Positives = 150/195 (76%), Gaps = 2/195 (1%)
Frame = +3
Query: 213 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 386
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 387 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 566
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214
Query: 567 VDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 746
VDLLAPY TVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY E
Sbjct: 215 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 274
Query: 747 MIESGVISLKDKTSK 791
MIESGVI L +K S+
Sbjct: 275 MIESGVIKLGEKQSE 289
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 58.4 bits (135), Expect = 5e-09
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 8/166 (4%)
Frame = +3
Query: 294 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 474 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIME 653
+ + +AP ++ E + TG+K VD L P T + ++
Sbjct: 394 SDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTIAID 453
Query: 654 LINN--------VAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI 767
I N +++ Y V+ +G++ L + E+ +
Sbjct: 454 TILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANAL 499
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 578
I + + + +E++ TGI +D++
Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVM 153
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 578
I + + + +E++ TGI +D++
Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVM 153
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 578
I + + + +E++ TGI +D++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVM 152
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 578
I + + + +E++ TGI +D++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVM 152
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 578
I + + + +E++ TGI +D++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVM 152
>At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) /
1,4-alpha-D-glucan maltohydrolase, putative almost
identical to beta-amylase BMY3 GI:15149457 from
[Arabidopsis thaliana]; identical to cDNA putative
beta-amylase BMY3 (BMY3) GI:15149456
Length = 536
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 614 KQPNLSSF----GIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVG 477
+QPN SSF G Q DF+ S+ + LL H D++ S + ++ S +G
Sbjct: 309 QQPNSSSFFSDGGSWESQYGDFFLSWYSSLLTSHADRVLSVASSAFSGIG 358
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 228 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 359
+NLP + + + R +LE A GE T RT A+D EG+V
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGIV 71
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 318 CSHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 202
C+ P + LP+ RG + + PQGHLE + I LP H
Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97
>At4g34340.1 68417.m04880 expressed protein
Length = 353
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 473 DGTTLVNRFADYIDDATEGFSSHRDTNW 390
DG +++ FA ++ A +GFSS T W
Sbjct: 259 DGLSVIEAFAPAMEAARDGFSSEAHTEW 286
>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 744 RGINHFLHEYALLLQQTQSNHHGL 673
R +NH LH++ L+L + NH+ L
Sbjct: 465 RKLNHALHKHTLILDTSPQNHYDL 488
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 620 SAKQPNLSSFGIRSEQI-DDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTTLVNRFA 444
S K+ + GI E D+ +SY L L RH DKL + S + LV+ +
Sbjct: 7 SEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDKLMKAAGLSEAEATAQFQELVHAY- 65
Query: 443 DYIDDATE--GFSSHR 402
+ + D E + SHR
Sbjct: 66 EVLSDPKERAWYDSHR 81
>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
F-box domain
Length = 338
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 774 LEKSHQIQSSRGINHFLHEYALLLQQTQSNHHGLWQHC*SVP*SIQF 634
L+ SH I LH LLL T+ N H +W C IQF
Sbjct: 79 LKDSHSNSEQVDIVQVLHCDGLLLCTTKDNRHVVWNPCLGETHWIQF 125
>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
reverse transcriptase [Arabidopsis thaliana] GI:976278
Length = 365
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 605 WVVWRSWCGQNCIDYGTDQQCCQSP 679
W++WR W +N + QQ CQSP
Sbjct: 142 WIMWRLWKSRNVFLF---QQKCQSP 163
>At1g63110.3 68414.m07131 cell division cycle protein-related
contains 9 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 407
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = -1
Query: 674 FGNIVDQFHNQYSFAHTSSAKQPNLSSFGIRSEQIDDFYTSYENLLLHRHV 522
+G + + F Y F + PN+ F ++ DF+ ++ ++LH ++
Sbjct: 226 YGGLEEMFKRTYGFILSIEDLSPNIGVFWYFFAEVFDFFRNFFLIVLHVNI 276
>At1g63110.2 68414.m07132 cell division cycle protein-related
contains 9 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 397
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = -1
Query: 674 FGNIVDQFHNQYSFAHTSSAKQPNLSSFGIRSEQIDDFYTSYENLLLHRHV 522
+G + + F Y F + PN+ F ++ DF+ ++ ++LH ++
Sbjct: 216 YGGLEEMFKRTYGFILSIEDLSPNIGVFWYFFAEVFDFFRNFFLIVLHVNI 266
>At1g63110.1 68414.m07130 cell division cycle protein-related
contains 9 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 469
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = -1
Query: 674 FGNIVDQFHNQYSFAHTSSAKQPNLSSFGIRSEQIDDFYTSYENLLLHRHV 522
+G + + F Y F + PN+ F ++ DF+ ++ ++LH ++
Sbjct: 288 YGGLEEMFKRTYGFILSIEDLSPNIGVFWYFFAEVFDFFRNFFLIVLHVNI 338
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,854,476
Number of Sequences: 28952
Number of extensions: 384952
Number of successful extensions: 1128
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -