Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0447
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    27   2.0  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   2.6  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   6.0  

>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -3

Query: 551 LNVHVPCDGERTHETNVPSTYERR*TYAREKTMNLSVR 438
           LN +   + ER  E+++P+  +++  Y ++KT NLS++
Sbjct: 461 LNTNSAPELERIIESDLPNNNKQKDRYFKDKTSNLSMK 498


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 301 KLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRN 429
           +++L+  + +  I NK     LK +LK E+K T + + V LRN
Sbjct: 223 EVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMDAASVELRN 265


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 228 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 121
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,417
Number of Sequences: 5004
Number of extensions: 42490
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)