Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0447
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    29   3.5  
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998     28   6.1  
07_03_0072 - 13051145-13052362                                         28   6.1  
10_08_0315 - 16686830-16687297                                         27   8.0  
04_03_0200 - 12570414-12570712,12572704-12573007                       27   8.0  
03_05_0862 + 28353235-28354431                                         27   8.0  

>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 58  SLVAASEQEYSPALNPVVLIDNGRCGVREVPL 153
           S V  +E+ Y+P+++PV+L D  R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216


>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
          Length = 473

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 252 SLSPRPSVATGLAPSTGKRPRSRRTWTGVVA 160
           +L  RPSV  G A +T + P SRR   GV A
Sbjct: 97  TLYTRPSVLAGAASATTRSPSSRRGGGGVRA 127


>07_03_0072 - 13051145-13052362
          Length = 405

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 338 IGLAVIFSLRWSLPPA*GCTLKQPDSKE 255
           +GL+ + ++RWSLPP+    L+Q +  E
Sbjct: 142 VGLSPVTAVRWSLPPSLLAALQQSEPLE 169


>10_08_0315 - 16686830-16687297
          Length = 155

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 424 RNSNERTERFIVFSRAYVYLRSYVDGTFVSCVRSPS 531
           ++ N RT+++   +   V L +Y D TF   V+SPS
Sbjct: 49  KDFNARTQKYKAETPMQVTLTAYKDSTFEFVVKSPS 84


>04_03_0200 - 12570414-12570712,12572704-12573007
          Length = 200

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 258 GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 145
           G   + RPS   G+A S+G + RS + W     T K N
Sbjct: 109 GVEQAARPSCNAGIASSSGGKKRS-KAWEDFDITEKEN 145


>03_05_0862 + 28353235-28354431
          Length = 398

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +2

Query: 152 FLVATTPVQVRLERGRFPVEGARPVATEGRGE 247
           FLV + P      RG   VE  RPVA  G GE
Sbjct: 262 FLVESPPGSAGGRRGLMQVELLRPVAASGGGE 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,143
Number of Sequences: 37544
Number of extensions: 299664
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)