Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0447
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42080.1 68414.m04853 hypothetical protein contains similarit...    31   0.55 
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   3.8  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    27   6.7  
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P...    27   8.9  

>At1g42080.1 68414.m04853 hypothetical protein contains similarity
           to cytochrome P450 (rapN) GI:987088 from [Streptomyces
           hygroscopicus]
          Length = 151

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 374 VLFNFPSRY---LFAIGLAVIFSLRWSLPPA*GCTLKQPDSKERPSRRDPPSLR 222
           +LF  P R    L  IG ++ FSL+   PP     L  P+    PS  DPP LR
Sbjct: 81  ILFTHPKRREKKLSLIGGSLAFSLKIEYPPLDPVRLLTPEDLSHPS--DPPDLR 132


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 246 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 115
           S  P  +   AP TGK+P  R +  G   TRK +     S  +D
Sbjct: 376 SREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 125 PLSIKTTGFSAGLYSCSLAATKEIL 51
           P+S+  +GF   LYSC    T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692


>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
           At1g25886, At4g03300
          Length = 1139

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 246 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 115
           S  P ++   AP T K+P  R +  G   TRK +     S  +D
Sbjct: 512 SREPPISMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 555


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,353,012
Number of Sequences: 28952
Number of extensions: 229106
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)