Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0446
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    64   3e-09
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    49   9e-05
UniRef50_Q9GSV9 Cluster: Ornithine decarboxylase antizyme; n=1; ...    48   2e-04
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct...    39   0.13 
UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-direct...    37   0.51 
UniRef50_Q4QQE6 Cluster: Endonuclease-reverse transcriptase; n=2...    34   3.6  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 30/32 (93%), Positives = 30/32 (93%)
 Frame = +3

Query: 3   KMSLRNKVTLYKTCIRPVMTYASVVFAHADPT 98
           KMSLRNKVTLYKTCIRPVMTYASVVFAHA  T
Sbjct: 804 KMSLRNKVTLYKTCIRPVMTYASVVFAHAART 835


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1;
          Antheraea mylitta|Rep: Reverse transcriptase-like -
          Antheraea mylitta (Tasar silkworm)
          Length = 186

 Score = 49.2 bits (112), Expect = 9e-05
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = +3

Query: 3  KMSLRNKVTLYKTCIRPVMTYASVVFAH 86
          KMSLR+K+ LYKTCIRPV+TY+  VFAH
Sbjct: 15 KMSLRHKLILYKTCIRPVITYSCPVFAH 42


>UniRef50_Q9GSV9 Cluster: Ornithine decarboxylase antizyme; n=1;
           Bombyx mori|Rep: Ornithine decarboxylase antizyme -
           Bombyx mori (Silk moth)
          Length = 261

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 88  LTPQHINNPNYIFLHYNMQ 144
           LTPQHINNPNYIFLHYNMQ
Sbjct: 243 LTPQHINNPNYIFLHYNMQ 261


>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
            DNA polymerase from mobile element jockey (Reverse
            transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
            similar to RNA-directed DNA polymerase from mobile
            element jockey (Reverse transcriptase) - Tribolium
            castaneum
          Length = 1336

 Score = 38.7 bits (86), Expect = 0.13
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +3

Query: 6    MSLRNKVTLYKTCIRPVMTYASVVFAHA 89
            +S+ NK+ LYK+ IRP MTYASV +A A
Sbjct: 1258 LSIDNKLLLYKSVIRPTMTYASVAWAFA 1285


>UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-directed
           DNA polymerase from mobile element jockey (Reverse
           transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to RNA-directed DNA polymerase from mobile
           element jockey (Reverse transcriptase) - Tribolium
           castaneum
          Length = 421

 Score = 36.7 bits (81), Expect = 0.51
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 6   MSLRNKVTLYKTCIRPVMTYASVVFAHA 89
           +S+ NK+ LYK+ IRP MTYA V +A A
Sbjct: 349 LSIDNKLLLYKSVIRPTMTYAPVAWAFA 376


>UniRef50_Q4QQE6 Cluster: Endonuclease-reverse transcriptase; n=2;
           Schistosoma|Rep: Endonuclease-reverse transcriptase -
           Schistosoma mansoni (Blood fluke)
          Length = 831

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 21  KVTLYKTCIRPVMTYASVVFAHADPT 98
           K+TLYK C+RP + Y S +F++ + T
Sbjct: 765 KLTLYKICVRPSLEYCSFIFSNMNTT 790


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,954,954
Number of Sequences: 1657284
Number of extensions: 8791885
Number of successful extensions: 16105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16099
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)