Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0446
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_35765| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001)               28   7.9  
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)                28   7.9  
SB_25871| Best HMM Match : SLH (HMM E-Value=1.1)                       28   7.9  
SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17)                  28   7.9  
SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)            28   7.9  
SB_56531| Best HMM Match : SLH (HMM E-Value=1.1)                       28   7.9  

>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 6    MSLRNKVTLYKTCIRPVMTYASVVFAHADP 95
            + ++  +  Y TCIRPV  YA  VF H  P
Sbjct: 1217 IKVKELLLFYLTCIRPVTEYACPVFHHCLP 1246


>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 24  VTLYKTCIRPVMTYASVVFAHADP 95
           +  Y TC+RP++ Y + +F H  P
Sbjct: 638 IGFYNTCVRPILEYCAPLFHHTIP 661


>SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 33  YKTCIRPVMTYASVVFAHADP 95
           Y TCIRP+M YA  VF ++ P
Sbjct: 344 YLTCIRPIMEYACPVFHNSLP 364


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 12   LRNKVTLYKTCIRPVMTYASVVFAH 86
            + + VT+Y + IRP+  YASV+F++
Sbjct: 4163 VEDMVTVYCSLIRPITEYASVIFSN 4187


>SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 3   KMSLRNKVTLYKTCIRPVMTYASVVFAHADPT 98
           ++  ++ +  Y + IRPV+ Y + VF HA P+
Sbjct: 480 RVPTKDIIDFYCSAIRPVLEYCAAVFHHALPS 511


>SB_35765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 24  VTLYKTCIRPVMTYASVVFAH 86
           +T+Y++ IR V+ YAS VFA+
Sbjct: 62  ITVYRSLIRSVIEYASAVFAN 82


>SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 24  VTLYKTCIRPVMTYASVVFAH 86
           +T+Y++ IR V+ YAS VFA+
Sbjct: 62  ITVYRSLIRSVIEYASAVFAN 82


>SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001)
          Length = 636

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 209 SFFPQK*SCFFRMATLDYPRLVQVKHLEILSKSV 310
           S+FPQ  +CFF +A L  P     +H E+L K++
Sbjct: 469 SYFPQSLTCFF-VAFLTKPNTRLSQHPELLKKAL 501


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 18  NKVTLYKTCIRPVMTYASVVFAHADP 95
           N+   YK CIR  + YA  VF +A P
Sbjct: 646 NRTLFYKACIRSAVDYAVPVFHNALP 671


>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
          Length = 1130

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 24  VTLYKTCIRPVMTYASVVFAHADP 95
           +  Y TC+RP++ Y + +  HA P
Sbjct: 289 IGFYDTCVRPILEYCAPLSYHAIP 312


>SB_25871| Best HMM Match : SLH (HMM E-Value=1.1)
          Length = 172

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 6  MSLRNKVTLYKTCIRPVMTYASVVFA 83
          +S  N + +Y++ +R  + YASVVFA
Sbjct: 19 VSTDNIIVVYRSLVRSTLEYASVVFA 44


>SB_6495| Best HMM Match : RVT_1 (HMM E-Value=1.2e-17)
          Length = 554

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 6   MSLRNKVTLYKTCIRPVMTYASVVFA 83
           +S  N + +Y++ +R  + YASVVFA
Sbjct: 401 VSTDNIIVVYRSLVRSTLEYASVVFA 426


>SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)
          Length = 599

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 6   MSLRNKVTLYKTCIRPVMTYASVVFA 83
           +S  N + +Y++ +R  + YASVVFA
Sbjct: 467 VSTDNIIVVYRSLVRSTLEYASVVFA 492


>SB_56531| Best HMM Match : SLH (HMM E-Value=1.1)
          Length = 151

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 6  MSLRNKVTLYKTCIRPVMTYASVVFA 83
          +S  N + +Y++ +R  + YASVVFA
Sbjct: 19 VSTDNIIVVYRSLVRSTLKYASVVFA 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,875,893
Number of Sequences: 59808
Number of extensions: 278139
Number of successful extensions: 792
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)