Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0446
         (672 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      31   1.4  
AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse tran...    31   1.4  
M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    29   5.8  

>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 3   KMSLRNKVTLYKTCIRPVMTYASVVFAHADPTAHQQP*L---HFLTLQYAVKFYSQTKLL 173
           K+S+ NK+ ++KT   P++ Y S V+     T  ++  +     L L   + +Y+ TK L
Sbjct: 810 KLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYL 869


>AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 832

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 3   KMSLRNKVTLYKTCIRPVMTYASVVFAHADPTAHQQP*L---HFLTLQYAVKFYSQTKLL 173
           K+S+ NK+ ++KT   P++ Y S V+     T  ++  +     L L   + +Y+ TK L
Sbjct: 758 KLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYL 817


>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 6   MSLRNKVTLYKTCIRPVMTYASVVFAHA 89
           +SL +KV LY + ++P+ TY S ++ +A
Sbjct: 779 LSLDHKVLLYNSILKPIWTYGSQLWGNA 806


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,081,179
Number of Sequences: 53049
Number of extensions: 400280
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)