Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0446
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.     29   4.0  
AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine r...    29   4.0  
U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    28   6.9  

>U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 106 NNPNYI-FLHYNMQ*NFIHKQSFFSGEKLTKKNNFLIFST 222
           N PN + FLH+ +  NF  K  +FS   L     FLI++T
Sbjct: 236 NIPNCVLFLHFFLNCNFTCKSKYFSFSNLANFFFFLIWNT 275


>AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine
           receptor, class x protein22 protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 586 VLIHLTRMTQVNRLSIRLDANLFFFLNKFTNINVLVSSSKQIKV 455
           V  H+T     N + + LDA+L+ F++ F  + +L+SS +   V
Sbjct: 235 VTYHVTAPLVTNSVLLFLDASLWAFMHAFEGLLILLSSQEMRSV 278


>U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical
           protein F52C9.5 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = +1

Query: 181 EKLTKKNNFLIFSTKIIVFFSYGNIRLSTTR-------SSQALRDP 297
           E+  K  NF IF+ K +V  S  N   STTR       SSQ  RDP
Sbjct: 73  EEKQKSQNFQIFNEKDLVTNSNANPYFSTTRKPKNRSDSSQKARDP 118


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 30   LYKTCIRPVMTYASVVFA-HADPTAH---QQP*LHF 125
            LYKT + P+M Y S V+A H++       +QP  HF
Sbjct: 1022 LYKTYVAPIMNYCSEVYAPHSNSVLSAKLEQPLRHF 1057


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,517
Number of Sequences: 27780
Number of extensions: 232585
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)