Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0445
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    27   2.1  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   2.7  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   4.8  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   4.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.4  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   8.4  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    25   8.4  

>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +1

Query: 334 VYDLEKYIYDNNIAPIIK----KNGKPVPNYDEVRYN 432
           + D+E+ I DN++ P+++    +    +P  DEVR N
Sbjct: 345 IEDVEQLIVDNHLQPVLRSVYTRTAFQIPGDDEVRIN 381


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 13  NNISSSTILNENVQ-RLLRDQSREQFDVIIAE 105
           +N+SSS+IL  +   +LL DQS  Q  V++ +
Sbjct: 159 DNVSSSSILQGSASSKLLPDQSARQHQVLVGQ 190


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 158 KGQSRTAWNEAYRSLNIHSAMI 93
           KGQS+  WNE Y+ ++    +I
Sbjct: 200 KGQSKRIWNELYKVIDSSDVLI 221


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
 Frame = +1

Query: 112 FSDLYASFHAVLDCPLIWFSTIEPHWMV-----LRLIDE----YPNPAYTSHFQDSFEVP 264
           +S + A    VLD P +    I P W++      +LID+    +PNP+Y  +     +  
Sbjct: 153 YSGMGAKCKKVLDKPSLSIKLIHPQWLLDCLQFGQLIDQDPYLFPNPSYKKNDSSISKAE 212

Query: 265 FTFVERMSVLSSQLTWSLSLN 327
            T + R  +   ++ +S  LN
Sbjct: 213 PTSLFRNVLHGKRIYFSNDLN 233


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 388  FLL*EQYCCRIYTFQDRIPTYLNLSST*VVMIVQTS 281
            FLL  Q CCRI     + P  L + S  +  I Q S
Sbjct: 1419 FLLCAQECCRILLTDSKSPFILEVFSAILEYICQAS 1454


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 451 NSHVSLGDAIKVPINYKAIGGYHIDGKVKELPPDLQKIMNESKHGVI 591
           N  ++ G    +P  YK++    I    K +    QK++  SKHG++
Sbjct: 152 NIIITTGCQPYIPPLYKSVDSPLIVHSSKFMSDHSQKLLRNSKHGIL 198


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 412 YDEVRYNGSLLLGNSHVSLGDAIKVPINYKAIGGYHIDGKVKELPPD 552
           ++   Y+G L L  SH+    A    + Y   G  +I+ K++E   D
Sbjct: 7   FETTLYDGELFLLPSHLQRMKASAKSLGYSWPGEQYIENKLREAVQD 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,421
Number of Sequences: 5004
Number of extensions: 60345
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)