Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0445
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.56 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.75 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.9  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 88  RTAHDSDPSVASEHSRSE 35
           R  HD+ PS  S+HSR +
Sbjct: 118 RRLHDNSPSFLSDHSRDQ 135


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 341 SYTHVFKLKLHVSCDDSTDILSTNVNGT 258
           S + +++LKL++ CD   DI+    N T
Sbjct: 33  STSALYRLKLYLFCDYDRDIIPEQKNAT 60


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 184 EVRSLRTKSKGNPELRGMKRIDH*TSIR 101
           E+  LR+    NPE+RG+K I   T +R
Sbjct: 332 ELGCLRSIILFNPEVRGLKSIQEVTLLR 359


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 184 EVRSLRTKSKGNPELRGMKRIDH*TSIR 101
           E+  LR+    NPE+RG+K I   T +R
Sbjct: 332 ELGCLRSIILFNPEVRGLKSIQEVTLLR 359


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 570 VHYFL*IRWQFFYFSINM 517
           V+Y + + W  FYF ++M
Sbjct: 75  VYYIVILAWAIFYFFMSM 92


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
 Frame = +3

Query: 15  QHKQLHYS----ERECSEATEGS 71
           +HK+ H      + EC+EAT G+
Sbjct: 191 EHKETHIDWQPEDEECTEATAGA 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,053
Number of Sequences: 438
Number of extensions: 4249
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)