Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0445
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein, ...    31   0.58 
At2g18530.1 68415.m02159 protein kinase family protein contains ...    29   3.1  
At3g19690.1 68416.m02494 pathogenesis-related protein, putative ...    28   4.1  
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...    28   5.4  
At2g30900.1 68415.m03766 expressed protein                             28   5.4  
At1g35660.1 68414.m04432 expressed protein                             27   7.2  

>At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein,
           putative very strong similarity to PIF3 like basic Helix
           Loop Helix protein 2 (PIL2) [Arabidopsis thaliana]
           GI:22535494
          Length = 346

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 436 SLLLGNSHVSLGDAIKVPINYKAIGGYHIDGKVKELPPDLQKIM 567
           ++L  N HV   + +K   + + +  YH   K+K +PPD Q ++
Sbjct: 74  NMLESNKHVDDSETLKASSSKRMMVDYHNRKKIKFIPPDEQSVV 117


>At2g18530.1 68415.m02159 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 213

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +1

Query: 268 TFVERMSVLSSQLTWSLSLNTWVY--DLEKYIYDNNIAPIIKKNGKPVPNYDEVRYNGSL 441
           +F      L+  +   L ++ ++Y   L++Y    N+A  I++NG  +P  D   +   +
Sbjct: 2   SFTNNCVYLNVHVFLILYIDVYMYYNTLQEYCSGRNLAKHIERNGGKLPKDDVRSFANEI 61

Query: 442 LLGNSHVSLGDAIKVPINYKAI 507
           LLG  ++     I   I  K I
Sbjct: 62  LLGLKYIHEEKIIHCDIKPKNI 83


>At3g19690.1 68416.m02494 pathogenesis-related protein, putative
           similar to PR-1a protein GI:19944 GB:X06930 from
           [Nicotiana tabacum]; contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 161

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 271 FVERMSVLSSQLTWSLSLNTWVYDLEKYIYDNNIAPIIKKNGKPVPNYDEVRYNGSLLLG 450
           F E +++ S +++   +   W+ + + Y YD+N       NG    +Y +V +  ++ LG
Sbjct: 75  FGENIAMSSGEMSAEDAAEMWINEKQYYDYDSNTCN--DPNGGTCLHYTQVVWKNTVRLG 132

Query: 451 NSHVSLGD-AIKVPINYKAIGGY 516
            + V        +  NY   G Y
Sbjct: 133 CAKVVCNSGGTFITCNYDPPGNY 155


>At4g23940.1 68417.m03443 FtsH protease, putative contains similarity
            to zinc dependent protease GI:7650138 from [Arabidopsis
            thaliana]
          Length = 946

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 427  YNGSL-LLGNSHVSLGDAIKVPINYKAIGGYHIDGKVKELPPD--LQKIMNESKHGVIYF 597
            YN ++ LL  +  +L   +KV +N K I G  ID  +   PP   L  ++ E   G + F
Sbjct: 862  YNKTVSLLRQNQTALLKTVKVLLNQKEISGEAIDFILDHYPPQTPLNSLLQEQNPGSLPF 921


>At2g30900.1 68415.m03766 expressed protein
          Length = 367

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = +1

Query: 328 TWVYDLEKYIYDNNIAPII------KKNGKPVPNYDEVRYNGS 438
           +WVYD    +YD+   P I      K NG+P   Y + R+  S
Sbjct: 48  SWVYDKSYPLYDSKNCPFIERQFNCKSNGRPDSEYLKYRWQPS 90


>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 400 PVPNYDEVRYNGSLLLGNSHVSLGDAIK 483
           P    D   +N  LLLG S++SLG+A K
Sbjct: 562 PTSKLDRKLWNLVLLLGESYLSLGEAYK 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,686
Number of Sequences: 28952
Number of extensions: 296420
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)