Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0443
         (774 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RRZ6 Cluster: Flavoprotein, putative; n=1; Plasmodium...    36   1.1  
UniRef50_Q7PDP0 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=...    33   7.9  

>UniRef50_Q7RRZ6 Cluster: Flavoprotein, putative; n=1; Plasmodium
           yoelii yoelii|Rep: Flavoprotein, putative - Plasmodium
           yoelii yoelii
          Length = 179

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +2

Query: 476 LLINASFICVFTNRELKKSQFLYFRLKISLFSNLIGTSLCTHW 604
           L++N S   +FT    K + F Y+ + IS+FS+L  TS+C  W
Sbjct: 105 LIVNTSNFFIFT----KWNHFTYYSVNISIFSHLFQTSICRCW 143


>UniRef50_Q7PDP0 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=3;
           Plasmodium (Vinckeia)|Rep: ERYTHROCYTE MEMBRANE PROTEIN
           PFEMP3 - Plasmodium yoelii yoelii
          Length = 789

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 170 FMTLSSNTIV-RTPTLQTNYIFM*LSTEQTLLGTVFGKCKKLKTKKNVISNRKSDCKN 340
           ++ L  N I+ R+  L  ++ FM LS ++T+LG +       KTKKN  ++     KN
Sbjct: 96  YLNLFFNIIIYRSFILYYSFFFMHLSEKKTILGKITNNTSSSKTKKNANNSNDKKEKN 153


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,082,409
Number of Sequences: 1657284
Number of extensions: 13547664
Number of successful extensions: 30112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30087
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)