Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0443
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       27   2.3  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   5.2  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   6.9  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    25   9.1  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.1  

>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +2

Query: 116 VIIIQ*NS*KYTIFHQCFFMTLSSNT-IVRTPTLQTNYIFM*LSTEQTLLG----TVFGK 280
           V++++     +T FH+C F TL   T  + + ++  NY F    T + L G    +++ K
Sbjct: 153 VLVLKSTGSGFTNFHKCEFTTLPEVTDRIFSTSIDCNYTFKHFDTFEELAGFDFNSIYEK 212

Query: 281 CKKLKTKKNVISNRKS 328
            K++  +   + + +S
Sbjct: 213 VKEITLETFALDDSES 228


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 83  LHCIKQNNDNSVIIIQ*NS*KYTIFH 160
           +HC K +N   +  ++ NS KY  FH
Sbjct: 776 MHCQKGSNQVEIEFVEFNSRKYPFFH 801


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 284 KKLKTKKNVISNRKSDCKNIIRLQKLG 364
           KK+KTKK     + S+ KN+  ++K G
Sbjct: 20  KKIKTKKKATGQQTSNTKNLRDVKKKG 46


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -1

Query: 492 EALIRSF*LYDDVRCLLSRTVYTLSKYSLVSLIDNYLHNI**YPNFCRRIIFLQSLLRFD 313
           E ++  F  Y++++ +L         Y +  L +  L  +   PN+C R   L S+L+ D
Sbjct: 217 EVIVTKFLEYNNMKHILRAHQLCSEGYQI--LFEKKLSTVWSAPNYCYRCANLASILQID 274

Query: 312 I---TFFFVFN 289
                FF VF+
Sbjct: 275 TDQSRFFNVFD 285


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 441 SRTVYTLSKYSLVSLI-DNYLHNI**YPNFCRRIIFLQSLLRFDITFFFVF 292
           +R ++ + +Y L+ LI   ++  +   P  CR ++F+ + L   I  +FVF
Sbjct: 638 ARPLFLVFEYILICLIFSQFMLAMGNRPRSCRVLLFISTALFSIIMIYFVF 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,857
Number of Sequences: 5004
Number of extensions: 66112
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)