Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0443
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53270| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13)                   29   5.5  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   7.3  
SB_33011| Best HMM Match : cNMP_binding (HMM E-Value=0.037)            28   7.3  
SB_18428| Best HMM Match : cNMP_binding (HMM E-Value=0.037)            28   7.3  

>SB_53270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 348 RIIFLQSLLRFDITFFFVFNFLHFPKTVPSSVCSVE--SYIK 229
           R +FL  +L + I  F  F FL+F KT P + C +E  SY K
Sbjct: 151 RTLFL--ILSWIIPLFVYFPFLYFSKTSPDNSCDIEVDSYSK 190


>SB_22386| Best HMM Match : HLH (HMM E-Value=1.6e-13)
          Length = 470

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 200 RTPTLQTNYIFM*LSTEQTLLGTVFGKCKKLKTKKNVISNRKSDCKNIIRLQKLGY 367
           + PT+QT        T+ TL    +G  K L    NV+ NR++  ++ ++L+++ Y
Sbjct: 218 QAPTVQTVNFTENPQTQNTLAEHGYGYFKALSVPNNVLDNRRTSLQD-VKLEQVVY 272


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 610 RIQPNILYKRVFPYS-RVPFSRHIYGTYDLPIKSFYCDLV 726
           RI+  +L   VF  S RVP S  +YG  DLP   F  +++
Sbjct: 240 RIKECLLSFMVFEASQRVPISECVYGLVDLPFNVFVTEVL 279


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 610 RIQPNILYKRVFPYS-RVPFSRHIYGTYDLPIKSFYCDLV 726
           RI+  +L   VF  S RVP S  +YG  DLP   F  +++
Sbjct: 215 RIKECLLSFMVFEASQRVPISECVYGLVDLPFNVFVTEVL 254


>SB_33011| Best HMM Match : cNMP_binding (HMM E-Value=0.037)
          Length = 210

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 583 YIAMYTLVKRIQPNILYKRVFPYSRVPFSRHIYGTYDLPIKSFYCDLVFY*TTVIDE 753
           YI  Y    ++ P  L  R   ++   +SRH+  TY LP+      ++ + T  +DE
Sbjct: 43  YIKSYMEHHKV-PEDLQNRAKRWAYYAWSRHVARTYCLPVNLLKLAMIVFRTHALDE 98


>SB_18428| Best HMM Match : cNMP_binding (HMM E-Value=0.037)
          Length = 210

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 583 YIAMYTLVKRIQPNILYKRVFPYSRVPFSRHIYGTYDLPIKSFYCDLVFY*TTVIDE 753
           YI  Y    ++ P  L  R   ++   +SRH+  TY LP+      ++ + T  +DE
Sbjct: 43  YIKSYMEHHKV-PEDLQNRAKRWAYYAWSRHVARTYCLPVNLLKLAMIVFRTHALDE 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,935,932
Number of Sequences: 59808
Number of extensions: 418489
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)