Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0443
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28090.1 68417.m04030 multi-copper oxidase type I family prot...    29   4.5  
At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identic...    29   4.5  
At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identic...    29   4.5  
At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identic...    29   4.5  

>At4g28090.1 68417.m04030 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 547

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 520 IKKIPIPV-FPVKDFFILKSNWYIAMYTLVKRI 615
           + +IP+P   P +DF  L ++WY   +T +K+I
Sbjct: 147 LPRIPVPFPEPAEDFTFLVNDWYRRNHTTLKKI 179


>At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identical
           to transcriptional adaptor ADA2b [Arabidopsis thaliana]
           gi|13591700|gb|AAK31320
          Length = 486

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 651 IWKNAFIKDIRLDPFYQCVHSDVPIRFENKEIFNRKYRN 535
           ++ N F KD+  +   QC   DV +RF +KE  +   RN
Sbjct: 295 LYPNPFEKDLSQEEKVQCRRLDVFMRFHSKEEHDELLRN 333


>At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identical
           to transcriptional adaptor ADA2b [Arabidopsis thaliana]
           gi|13591700|gb|AAK31320
          Length = 483

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 651 IWKNAFIKDIRLDPFYQCVHSDVPIRFENKEIFNRKYRN 535
           ++ N F KD+  +   QC   DV +RF +KE  +   RN
Sbjct: 292 LYPNPFEKDLSQEEKVQCRRLDVFMRFHSKEEHDELLRN 330


>At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identical
           to transcriptional adaptor ADA2b [Arabidopsis thaliana]
           gi|13591700|gb|AAK31320
          Length = 487

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 651 IWKNAFIKDIRLDPFYQCVHSDVPIRFENKEIFNRKYRN 535
           ++ N F KD+  +   QC   DV +RF +KE  +   RN
Sbjct: 296 LYPNPFEKDLSQEEKVQCRRLDVFMRFHSKEEHDELLRN 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,787,611
Number of Sequences: 28952
Number of extensions: 298605
Number of successful extensions: 572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)