Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0440
(771 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 208 2e-54
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 192 2e-49
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 192 2e-49
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 149 2e-36
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 145 3e-35
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 145 3e-35
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 145 3e-35
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 143 1e-34
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 140 7e-34
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 137 9e-33
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 109 2e-24
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 108 5e-24
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 106 2e-23
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 102 3e-22
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 101 4e-22
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 95 6e-20
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 91 6e-19
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 86 3e-17
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 86 3e-17
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 85 6e-17
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 81 8e-16
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 80 2e-15
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 76 3e-14
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 75 7e-14
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 74 1e-13
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 73 3e-13
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 72 4e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 72 5e-13
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 71 6e-13
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 71 9e-13
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 67 1e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 66 2e-11
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 64 7e-11
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 64 7e-11
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 64 7e-11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 64 1e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 63 2e-10
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 63 2e-10
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 62 3e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 62 4e-10
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 62 5e-10
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 61 7e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 61 9e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 61 9e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 61 9e-10
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 60 1e-09
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 59 4e-09
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 57 1e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 3e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 55 5e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 54 8e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 54 1e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 54 1e-07
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 53 2e-07
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 52 4e-07
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 51 1e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 50 2e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 5e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 48 9e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 45 6e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 43 3e-04
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 43 3e-04
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 36 0.039
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.84
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 1.1
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 30 1.5
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 29 2.6
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 29 2.6
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 2.6
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 29 4.5
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 4.5
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 5.9
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.9
At2g25460.1 68415.m03049 expressed protein 28 5.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 208 bits (509), Expect = 2e-54
Identities = 92/161 (57%), Positives = 118/161 (73%)
Frame = +3
Query: 285 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 464
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 465 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 644
+ VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKTL+Y+LPAIVH+N QP + GD
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD 171
Query: 645 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 767
GPI LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK
Sbjct: 172 GPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPK 212
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 192 bits (468), Expect = 2e-49
Identities = 84/164 (51%), Positives = 120/164 (73%)
Frame = +3
Query: 276 PNWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 455
P + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 456 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 635
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 636 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 767
+ DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 192 bits (468), Expect = 2e-49
Identities = 84/164 (51%), Positives = 120/164 (73%)
Frame = +3
Query: 276 PNWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 455
P + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 456 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 635
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 636 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 767
+ DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 149 bits (362), Expect = 2e-36
Identities = 66/160 (41%), Positives = 101/160 (63%)
Frame = +3
Query: 288 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 467
S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 468 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 647
+K Y++PT IQ Q PI +SG++++G+A+TGSGKT A++LP IVHI +QP ++R +G
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG 301
Query: 648 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 767
PI ++ APTRELA QI A F +R + V+GG K
Sbjct: 302 PIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSK 341
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 145 bits (351), Expect = 3e-35
Identities = 70/147 (47%), Positives = 93/147 (63%)
Frame = +3
Query: 327 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 506
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 507 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 686
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 687 QQIQQVAADFGHTSYVRNTCVFGGAPK 767
QIQ+ A FG +S + TC++GGAPK
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPK 270
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 145 bits (351), Expect = 3e-35
Identities = 70/147 (47%), Positives = 93/147 (63%)
Frame = +3
Query: 327 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 506
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 507 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 686
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 687 QQIQQVAADFGHTSYVRNTCVFGGAPK 767
QIQ+ A FG +S + TC++GGAPK
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPK 270
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 145 bits (351), Expect = 3e-35
Identities = 70/147 (47%), Positives = 93/147 (63%)
Frame = +3
Query: 327 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 506
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 507 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 686
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 687 QQIQQVAADFGHTSYVRNTCVFGGAPK 767
QIQ+ A FG +S + TC++GGAPK
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPK 270
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 143 bits (347), Expect = 1e-34
Identities = 66/157 (42%), Positives = 95/157 (60%)
Frame = +3
Query: 291 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 470
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 471 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 650
+K + Y++P PIQ Q PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGP
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 603
Query: 651 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGA 761
I LV+APTREL QQI F +R V+GG+
Sbjct: 604 IGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGS 640
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 140 bits (340), Expect = 7e-34
Identities = 66/157 (42%), Positives = 94/157 (59%)
Frame = +3
Query: 291 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 470
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 471 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 650
+K + Y++P PIQAQ PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGP
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
Query: 651 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGA 761
I LV+APTREL QQI F + V+GG+
Sbjct: 471 IGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGS 507
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 137 bits (331), Expect = 9e-33
Identities = 70/157 (44%), Positives = 97/157 (61%), Gaps = 4/157 (2%)
Frame = +3
Query: 309 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 476
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 477 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 656
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 657 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 767
L+LAPTRELA QIQ A FG +S + TC++GGAPK
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPK 547
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 109 bits (262), Expect = 2e-24
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Frame = +3
Query: 318 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 497
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 498 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLA 668
TPIQ QG P+ +SG++++G+A TGSGKTL ++LP I+ + PI G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 669 PTRELAQQIQQVAADF 716
P+RELA+Q V F
Sbjct: 181 PSRELAKQTYDVVEQF 196
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 108 bits (259), Expect = 5e-24
Identities = 48/132 (36%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
Frame = +3
Query: 372 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 551
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 552 GVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 722
G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 723 TSYVRNTCVFGG 758
R T + GG
Sbjct: 415 YLGFRVTSIVGG 426
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 106 bits (254), Expect = 2e-23
Identities = 50/99 (50%), Positives = 67/99 (67%)
Frame = +3
Query: 471 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 650
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGP 302
Query: 651 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 767
LVL+PTRELA QIQ A FG +S + C++GGAPK
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPK 341
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 366 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 455
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 102 bits (244), Expect = 3e-22
Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Frame = +3
Query: 321 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 500
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 501 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAP 671
PIQ QG P+ ++G++++G+A TGSGKTL ++LP I+ + PI G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 672 TRELAQQIQQVAADF 716
+RELA+Q +V F
Sbjct: 231 SRELARQTYEVVEQF 245
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 101 bits (243), Expect = 4e-22
Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Frame = +3
Query: 360 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 533
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 534 SGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQ 701
G++L+G+A+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 702 VAADFGHTSYVRNTCVFGGAPK 767
V + G +++ CV+GG+ K
Sbjct: 210 VLREAGEPCGLKSICVYGGSSK 231
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 94.7 bits (225), Expect = 6e-20
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Frame = +3
Query: 264 NMRRPNWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYF 434
N R WD + PF + +P P ++ + + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 435 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 614
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT A+ P I I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 615 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP 764
++R G P+A++L+PTRELA QI A F + + V+ +GG P
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTP 276
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 91.5 bits (217), Expect = 6e-19
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Frame = +3
Query: 264 NMRRPNWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 434
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 435 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 614
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT A+ P I I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 615 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP 764
I R G P+A++L+PTRELA QI A F + + V+ +GG P
Sbjct: 209 MKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTP 263
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 85.8 bits (203), Expect = 3e-17
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Frame = +3
Query: 264 NMRRPNWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 434
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 435 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 614
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 615 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP 764
+ R G P A++L+PTRELA QI A F + + V+ +GG P
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTP 268
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 85.8 bits (203), Expect = 3e-17
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Frame = +3
Query: 264 NMRRPNWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 434
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 435 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 614
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 615 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP 764
+ R G P A++L+PTRELA QI A F + + V+ +GG P
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTP 268
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 84.6 bits (200), Expect = 6e-17
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Frame = +3
Query: 351 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 524
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 525 IAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTRELAQQI 695
A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 696 QQVAADFGHTSYVRNTCVFGGAP 764
+ A G + V GG P
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDP 225
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 81.0 bits (191), Expect = 8e-16
Identities = 43/113 (38%), Positives = 67/113 (59%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 612 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKE 770
+ P +G G AL+L+PTR+LA+Q + + G + +R + + GG E
Sbjct: 90 LKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSME 139
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 79.8 bits (188), Expect = 2e-15
Identities = 46/122 (37%), Positives = 68/122 (55%)
Frame = +3
Query: 393 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 572
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 573 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 752
GKT A+ LP + + +P +R L+L PTRELA QI + + + ++ +
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIV 273
Query: 753 GG 758
GG
Sbjct: 274 GG 275
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 75.8 bits (178), Expect = 3e-14
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Frame = +3
Query: 375 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 542
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 543 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 692
A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 74.5 bits (175), Expect = 7e-14
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Frame = +3
Query: 480 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 656
MG++ PT +QAQ P+ +SG++++ A TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 657 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPK 767
LV+ PTREL Q+ + H ++ V GG K
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKK 145
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 73.7 bits (173), Expect = 1e-13
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Frame = +3
Query: 360 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 539
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 540 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 695
K++V A+TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 72.5 bits (170), Expect = 3e-13
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Frame = +3
Query: 396 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 575
V VEV NP + +++ +K G + PIQA + + + G +LVG A+TG G
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 576 KTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 740
KTLA++LP + + N P + G P LVL PTRELA+Q+ +G + + +
Sbjct: 146 KTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSS 205
Query: 741 TCVFGG 758
C++GG
Sbjct: 206 CCLYGG 211
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 72.1 bits (169), Expect = 4e-13
Identities = 40/109 (36%), Positives = 63/109 (57%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 612 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 758
+ P G ALV+ PTRELA Q+ + G +R + + GG
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGG 163
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 71.7 bits (168), Expect = 5e-13
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Frame = +3
Query: 423 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 602
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 603 IVHINNQPPIRRGD-----GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGA 761
IV + + G P +VL PTREL++Q+ +VA H + R+ V GG+
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGS 227
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 71.3 bits (167), Expect = 6e-13
Identities = 45/138 (32%), Positives = 70/138 (50%)
Frame = +3
Query: 300 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 479
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 480 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 659
MG+ T IQA+ P M G++++G A+TGSGKTLA+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 660 VLAPTRELAQQIQQVAAD 713
V+ PTRELA Q VA +
Sbjct: 231 VICPTRELAIQSYGVAKE 248
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 70.9 bits (166), Expect = 9e-13
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Frame = +3
Query: 408 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 587
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 588 YILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFGHTSYVRNTC 746
+ +P + + +++P R P A VL+PTRELA QI + G +R
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAV 122
Query: 747 VFGG 758
+ GG
Sbjct: 123 LVGG 126
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 67.3 bits (157), Expect = 1e-11
Identities = 39/104 (37%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Frame = +3
Query: 459 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 635
+ + + + G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 636 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAP 764
RG P+ LVLAPTRELA+Q+++ +F ++ +T C++GG P
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTP 215
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 66.1 bits (154), Expect = 2e-11
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Frame = +3
Query: 459 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 635
+ + +K G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 636 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAP 764
RG P LVLAPTRELA+Q+++ +F ++ +T C++GG P
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTP 227
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 64.5 bits (150), Expect = 7e-11
Identities = 33/109 (30%), Positives = 60/109 (55%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 612 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 758
I+ + + A+++ PTRELA Q QV + G ++ GG
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGG 236
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 64.5 bits (150), Expect = 7e-11
Identities = 33/109 (30%), Positives = 60/109 (55%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 612 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 758
I+ + + A+++ PTRELA Q QV + G ++ GG
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGG 236
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 64.5 bits (150), Expect = 7e-11
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 363 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 542
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 543 NLVGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 713
+++G A+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/90 (33%), Positives = 56/90 (62%)
Frame = +3
Query: 423 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 602
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 603 IVHINNQPPIRRGDGPIALVLAPTRELAQQ 692
+ ++ + DG ++++PTRELA Q
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Frame = +3
Query: 465 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 644
+ +K G++ T +Q PI + GK+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 645 GP---IALVLAPTRELAQQ 692
I LV+ PTRELA Q
Sbjct: 455 RQPPIIVLVVCPTRELASQ 473
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 612 INNQPPIRRGDGP---IALVLAPTRELAQQ 692
+ PP R + I LV+ PTRELA Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Frame = +3
Query: 465 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 644
+ +K GY+ T +Q PI + GK+++ A+TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 645 --GPI-ALVLAPTRELAQQ 692
PI ALV+ PTRELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 62.1 bits (144), Expect = 4e-10
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Frame = +3
Query: 483 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 653
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 654 ALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKE 770
++++PTREL+ QI +VA F T V + + GG E
Sbjct: 93 GVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVE 132
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 61.7 bits (143), Expect = 5e-10
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Frame = +3
Query: 444 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 623
+ P +++ ++ G PIQ A+ G++++ A+TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 624 ----PPIRR-GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 758
RR G P LVLAPTRELA+Q+++ + Y+ CV+GG
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGG 215
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 61.3 bits (142), Expect = 7e-10
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Frame = +3
Query: 513 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTREL 683
Q P A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 684 AQQIQQVAADFGHTSYVRNTCVFGGAP 764
Q++ A G + V GG P
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDP 88
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/109 (30%), Positives = 60/109 (55%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 612 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 758
I+ + + A++L PTRELA Q QV + ++ GG
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGG 229
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/109 (30%), Positives = 60/109 (55%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 612 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 758
I+ + + A++L PTRELA Q QV + ++ GG
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGG 229
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/109 (30%), Positives = 60/109 (55%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 612 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 758
I+ + + + A++L PTRELA Q QV + + GG
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGG 259
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 60.5 bits (140), Expect = 1e-09
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Frame = +3
Query: 420 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--LAYI 593
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 594 LPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFG 755
+ IV+I+++ LVL+P+RELA Q ++ G HT+ + C+ G
Sbjct: 80 VCQIVNISSRK-------VQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGG 127
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Frame = +3
Query: 483 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 653
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 654 ALVLAPTRELAQQIQQVA 707
++++PTREL+ QI +VA
Sbjct: 94 GVIISPTRELSAQIHKVA 111
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/86 (36%), Positives = 49/86 (56%)
Frame = +3
Query: 450 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 629
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ-- 141
Query: 630 IRRGDGPIALVLAPTRELAQQIQQVA 707
A+++ PTREL Q+ +VA
Sbjct: 142 ---RSSVQAVIVVPTRELGMQVTKVA 164
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.6 bits (128), Expect = 3e-08
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Frame = +3
Query: 378 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMSG--KNL 548
+N + SG + FE+ N + +G+ M +++P+ IQA P+ M+ K+L
Sbjct: 75 SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHL 134
Query: 549 VGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 719
+ A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 135 IAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 55.2 bits (127), Expect = 5e-08
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 612 INNQPPIRRGDGP--------IALVLAPTRELAQQI 695
I R A+++AP+REL QI
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 54.4 bits (125), Expect = 8e-08
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Frame = +3
Query: 393 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 572
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 573 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 749
GKT L ++ + AL+L+PTRELA Q ++ G H + + C+
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
Query: 750 FGGAPKE 770
G + E
Sbjct: 139 GGNSVGE 145
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
F E + + + +K + P IQA + + GK+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 612 INN---QPPIRRGDG-PIALVLAPTRELAQQI 695
+ Q + G P +VL PT ELA Q+
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 53.6 bits (123), Expect = 1e-07
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +3
Query: 408 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 587
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 588 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFGGAP 764
+ + ++ + ALVLAPTRELAQQI++V G V+ + CV G +
Sbjct: 93 FCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSV 147
Query: 765 KE 770
+E
Sbjct: 148 RE 149
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Frame = +3
Query: 498 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLA 668
TP+QA P+ S K++ A TGSGKTLA+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 669 PTRELAQQIQQVAADFGHT-SYVRNTCVFGG 758
PTREL+ QI VA F T + V + + GG
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGG 128
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT + +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 612 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFGGAPKE 770
++ + ALVLAPTRELAQQI++V G V+ + CV G + +E
Sbjct: 101 LDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE 149
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 50.8 bits (116), Expect = 1e-06
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +3
Query: 450 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 629
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT + + ++
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLV 108
Query: 630 IRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFGGAPKE 770
+ ALVLAPTRELAQQI++V G V+ CV G + +E
Sbjct: 109 QCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVRE 151
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 49.6 bits (113), Expect = 2e-06
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Frame = +3
Query: 459 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHI------- 614
+ + + + +KEPT IQ + +A GK+++G A+TGSGKTLA+ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 615 -------NNQPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 758
+ DG + AL++ PTRELA Q+ + + V+ + GG
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGG 316
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +3
Query: 432 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 611
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 612 I----NNQPPIRRGDGPIALVLAPTRELAQQI 695
+ N+ + + AL+L PTRELA QI
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 47.6 bits (108), Expect = 9e-06
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Frame = +3
Query: 279 NWDSVSLQPFNKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEE 440
N D + N+N D P + R ++ + ++ V E H+ I + F+E
Sbjct: 320 NHDIKLTKRVNRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDE 379
Query: 441 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-- 614
+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI +
Sbjct: 380 SCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLK 439
Query: 615 --NNQPPIRRGDGPIALVLAPTRELAQQI 695
N+ + + L+L PTRELA QI
Sbjct: 440 AMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Frame = +3
Query: 453 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN---- 620
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALD 148
Query: 621 QPPIRRGDGP-----IALVLAPTRELAQQI 695
R + P I+L+L P L +Q+
Sbjct: 149 SEVTNREERPFPLKNISLILCPNVMLCEQV 178
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +3
Query: 459 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQP 626
+++ ++ MG P+Q W I G +++ + TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 627 PIRRGDGPIALVLAPTRELAQQIQQV 704
P+R ALV+ PTR+LA Q++ V
Sbjct: 91 PVR---CLRALVVLPTRDLALQVKDV 113
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 483 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 659
G++ P+ +Q + P A+ G +++ A++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 660 VLAPTRELAQQI 695
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 483 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 659
G++ P+ +Q + P A+ G +++ A++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 660 VLAPTRELAQQI 695
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 35.5 bits (78), Expect = 0.039
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = +3
Query: 462 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG 641
+ +K +G QA+ A++GKN+ T SGK+L Y +P + +
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVF------EELCKD 436
Query: 642 DGPIALVLAPTRELAQQIQQVAAD 713
AL L PT+ LAQ + +D
Sbjct: 437 TNSCALYLFPTKALAQDQLRALSD 460
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +3
Query: 414 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYI 593
H Y E D + G K P+Q Q +M K+ + TG GK+L Y
Sbjct: 180 HETPSYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQ 239
Query: 594 LPA 602
LPA
Sbjct: 240 LPA 242
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 474 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 608
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 558 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 695
A++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 264 NMRRPNWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 431
+MRRPN D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 432 FEE 440
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 264 NMRRPNWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 431
+MRRPN D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 432 FEE 440
EE
Sbjct: 811 NEE 813
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 483 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 608
GY Q Q + + G + + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 28.7 bits (61), Expect = 4.5
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +3
Query: 333 PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE---ANFPDYVQQGVKTMGYKEP-- 497
P + K SP ++ E N V + +EV P + A P+ ++ K G E
Sbjct: 429 PGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQV 488
Query: 498 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 629
+ + AQ + + + KNL+GV + GS L+ + A+ PP
Sbjct: 489 SALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQKAPP 532
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 281 IWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKF-GTTVSTAIIPVTRH- 108
+W VL + F F K R ++S A +R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 107 -DYFSDLVEDVYLNYGFFLTQGPP 39
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 242 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 63
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 694 ICCANSLVGAKTKAIGPSPLRI 629
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 5.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 189 EKNYRRICCLLQIWNHRFHGYY 124
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,264,205
Number of Sequences: 28952
Number of extensions: 349170
Number of successful extensions: 1166
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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