Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0439
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 32 0.60
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 31 0.79
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 31 1.0
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 31 1.0
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562... 29 3.2
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 29 5.6
03_02_0150 + 5941560-5941739,5942027-5942118,5942232-5942298,594... 29 5.6
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 28 7.4
11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122 28 9.7
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 28 9.7
09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523... 28 9.7
09_02_0024 + 3084891-3086165 28 9.7
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 31.9 bits (69), Expect = 0.60
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 2 CNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQMV 181
C+G D KD S+ AC +D N P C + + G R+ I N+ +V
Sbjct: 1007 CSGDEDTKDSSNSIACEAIIDVNTV----PVTCSVSSVYEIGKGIRV---INLNEADNLV 1059
Query: 182 TITFNGA-VNVDNIDL 226
+ N + VN +DL
Sbjct: 1060 DVDINSSEVNSGTVDL 1075
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 643 TLMWHAEIQCVRPYRDASKRSSDGCIIHEVLITHHFELFVSTDT*VRRPNSNYR 482
TL H++ C+ + +RS+DG IIH + T TD ++P YR
Sbjct: 819 TLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDTDIIIAEEPTDGSTKKPEDMYR 872
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 643 TLMWHAEIQCVRPYRDASKRSSDGCIIHEVLITHHFELFVSTDT*VRRPNSNYR 482
T++ H++ C+ + +RS+DG +IH + T TD ++P YR
Sbjct: 615 TILQHSKEHCLMGIKGTVRRSTDGHVIHANIDTDIIIADEPTDGSTKKPEDMYR 668
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 643 TLMWHAEIQCVRPYRDASKRSSDGCIIHEVLITHHFELFVSTDT*VRRPNSNYR 482
T++ H++ C+ + +RS+DG +IH + T TD ++P YR
Sbjct: 612 TILQHSKEHCLMGIKGTVRRSTDGHVIHANIDTDIIIAEEPTDGSTKKPEDMYR 665
>09_06_0270 +
21954652-21955245,21955827-21955964,21956050-21956295,
21956407-21956520,21956633-21956815,21956926-21957143,
21957210-21957246,21957865-21958219,21958284-21958337,
21958513-21958529
Length = 651
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 398 TSGSYDDWLAEMAGARLIIERYANITDSSIIGVRAP 505
TS SYD AE A A L+ E A+ D++ I RAP
Sbjct: 74 TSRSYDALEAERAVAELLREHGASPADAASIAARAP 109
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 32 SDENACTVELDPNRAPDCDPNQCVLP 109
S EN +++DP+ C P+ C+LP
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLP 273
>03_02_0150 +
5941560-5941739,5942027-5942118,5942232-5942298,
5942401-5942523,5942692-5942784,5943149-5943278,
5943483-5943564,5943682-5943814,5944246-5944451,
5944538-5944663,5945024-5945333,5945518-5945643,
5946151-5946456
Length = 657
Score = 28.7 bits (61), Expect = 5.6
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Frame = +2
Query: 356 SVFSITHKDDPQYWTSGSYDDWLAEMAGARLI----IERYANITD--SSIIGVRAPYLRV 517
++F + ++ Q+W S Y + +A L E+Y I SS+ + P+L
Sbjct: 398 NMFYVPAENREQFWYSIDYGMFRFCIANTELDWRPGTEQYKFIEHCFSSVDRQKQPWLIF 457
Query: 518 GGNKQFEMMGDQYFVYDASITAPLGRVPIWPYTLYFRMPHKCNGNAHNCPSRSHPVWEMV 697
++ ++V + + P+GR + P +++ G+ H R+ PV+E+V
Sbjct: 458 LAHRVLGYSSASFYVEEGTTEEPMGRESLQPLWQKYKVDIAMYGHVHGY-ERTCPVYEVV 516
Query: 698 MNELD 712
D
Sbjct: 517 EGGAD 521
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = -2
Query: 295 DEKRSFNLTTVRIMTITVEYLFI*IDVVNIHSTVKCNSNHLRYLIWFNSTWDTC 134
+E +S + + V+Y+ I +++V+ T KC SN+ + +++ + + +C
Sbjct: 644 NELKSLFSALLEETNLAVKYIEIVLNMVHTSETAKCISNNSKNILYKTTLFSSC 697
>11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122
Length = 590
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 685 NGVTSRRTVVGVAVTLMWHAEIQCVR 608
N T R V G TL WHA + C+R
Sbjct: 113 NEHTYRFNVTGQVGTLWWHAHVTCLR 138
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 503 PYLRVGGNKQFEMMGDQYFVYDASITAPLGRVPIWPYTLYFRMPHKCNGNAHNCPSRSHP 682
P+L ++ ++Y+ + S + P+GR + P R+ G+ HN R+ P
Sbjct: 477 PWLVFAAHRPLGYSSNEYYAREGSFSEPMGRT-LQPLWQKHRVDLAVYGHVHNY-ERTCP 534
Query: 683 VWE 691
V+E
Sbjct: 535 VYE 537
>09_04_0426 -
17451731-17451886,17451974-17452079,17452289-17452387,
17452782-17452888,17452985-17453230,17454187-17454461,
17454834-17454886,17455163-17455455
Length = 444
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 32 SDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVP 172
SD AC+ +D + + DP P C + DG P I P P
Sbjct: 249 SDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFFPSRIVPGYDP 295
>09_02_0024 + 3084891-3086165
Length = 424
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +3
Query: 351 KFLYFP*LIKMIRNTGRVVRTMIGWLKWPELVLSLNVTQISLTLL*LEFGRLTYVSVETN 530
+F+Y+ K +N R++ +G + W +V V + E G L VS +
Sbjct: 245 RFVYWRSNTKNNKNVERILLLDVGTMNWTVIVAPFQVGESYCVADMAEHGGLCLVSSQEQ 304
Query: 531 NSK*WV 548
N + WV
Sbjct: 305 NLQLWV 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,709,253
Number of Sequences: 37544
Number of extensions: 509407
Number of successful extensions: 1247
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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