Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0439
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.3  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   5.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 16/72 (22%), Positives = 28/72 (38%)
 Frame = +2

Query: 194 NGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSIT 373
           N  V + +++ Y  I   N  +        TF    +YT Y    E       I   +++
Sbjct: 197 NTWVYIADVEGYALIIYNNADDSFQRLTSSTFVYDPRYTKYTINDESFSLQDGILGMALS 256

Query: 374 HKDDPQYWTSGS 409
           HK    Y+++ S
Sbjct: 257 HKTQNLYYSAMS 268


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 749 GCHVVDSCSNIQS 787
           G  ++DSCSN+ S
Sbjct: 106 GVEMIDSCSNVDS 118


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 624 SACHISVTATPTTVRLEVTPFGKWS 698
           S+C I VT  P   +  +  FG W+
Sbjct: 149 SSCTIDVTYFPFDQQTCIMKFGSWT 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,720
Number of Sequences: 438
Number of extensions: 5487
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)