Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0438
         (810 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria tenella...    34   3.7  
UniRef50_Q9EMM6 Cluster: AMV173; n=1; Amsacta moorei entomopoxvi...    33   8.5  
UniRef50_A0BYS8 Cluster: Chromosome undetermined scaffold_138, w...    33   8.5  

>UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria
           tenella|Rep: RNA polymerase C2 - Eimeria tenella
          Length = 1050

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
 Frame = -2

Query: 464 FSVLQLLYILSYNLHFKL*LYVSSNPMHFKIDSMLVFKI---VSYSLSMYCNLFSINCII 294
           + +L+  YIL+YN+ +   +Y + N +  K   ++ FK+   V Y+     N+   N II
Sbjct: 556 YLILKNTYILNYNIKYIFNIYNTINLIKCKKKIIIWFKMFLKVFYTKLKKKNILKKNNII 615

Query: 293 YAVNIYVVN*SIIYGYLQY 237
           + + +++ N   I+ Y +Y
Sbjct: 616 FPIKLHINNNIYIFIYFKY 634


>UniRef50_Q9EMM6 Cluster: AMV173; n=1; Amsacta moorei entomopoxvirus
           'L'|Rep: AMV173 - Amsacta moorei entomopoxvirus (AmEPV)
          Length = 440

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
 Frame = -2

Query: 461 SVLQLLYILSYNLHFKL*LYVSSNPM----------HFKIDSMLVFKIVSYSLSMYCNLF 312
           ++   ++ L YNL++KL L++  N               +D   ++  +  +++MYC  F
Sbjct: 148 NIWDAIHKLDYNLYYKLNLFLKKNSQIDYIRCILSSDNNLDMETIYLNIMNNINMYCK-F 206

Query: 311 SINCIIYAV-NIYVVN*SIIYGYLQ 240
           +IN + Y   NIY  N  +I+  L+
Sbjct: 207 NINILFYRKNNIYYYNDPLIFNNLE 231


>UniRef50_A0BYS8 Cluster: Chromosome undetermined scaffold_138, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_138, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1306

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -2

Query: 467  LFSVLQLLYILSYNLHFKL*LYVSSNPMH-FKIDSMLVFKIVSYSLSMYCNLFSINCIIY 291
            L SV Q + +++    F+L   ++ N  + F ++    +KI S+ + +Y     + C + 
Sbjct: 1179 LSSVSQFVNVIANFQQFQLPQIITFNSSYGFLLEDFQTYKISSFEIEIYLQSKKVECQLI 1238

Query: 290  AVNIYVVN*SIIYGYLQYKP 231
            A N ++ N + IY +  YKP
Sbjct: 1239 AYN-FINNKTAIYKF-NYKP 1256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,157,797
Number of Sequences: 1657284
Number of extensions: 13743802
Number of successful extensions: 30050
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30029
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)