Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0438
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      27   3.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   7.3  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   9.6  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -2

Query: 407 LYVSSNPMHFKIDSMLVFKIVSYSLSMYCNLFSINCIIYAVNIYVVN*SIIYGYLQYKPC 228
           L   S P+   + S+++F   S  +S+Y N  S   + +  N+  V   I++ ++  KPC
Sbjct: 75  LVADSLPVSQHLSSVVIF--ASVFVSIYRNQLSCALVGFVSNVSAVAAFILWDFVLRKPC 132


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 719 YYQHYKQPINKSLMLQTNRSSTFSVLQCFWTFFYV*STNCRFVGN 585
           Y + Y   + K  + QTN     +    +WT F   +T+ RF+ +
Sbjct: 89  YLEEYLARLRKECISQTNHEEQLAAYAKYWTRF---TTSARFINH 130


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 325 YIDKLYETILNTNIESILKCIGLLDTYSYSLKCRL 429
           ++ +L   I N  ++ + + + LLD+ SY+L+C +
Sbjct: 293 FLVRLSSLIPNLCLKQLTQLVKLLDSESYTLRCAI 327


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 328 IDKLYETILNTNIESILKCIGLLDT 402
           +DK+Y  +LN + +++ K I L++T
Sbjct: 448 VDKVYTNVLNNHCKNLEKLIELVET 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,523
Number of Sequences: 5004
Number of extensions: 66310
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)