Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0438
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.7  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 152 KSGFLRFYLEVLHLEDTFTHKMY*TLLYLDFYKNHYRSVLFASSDKQLQH 3
           +  F  +Y    H +D   H+   TL   +F    YR+    ++ K LQH
Sbjct: 12  RRNFSCYYSLKRHFQDK--HEQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 541 NKWFWKLQEIRKNVGFPTNLQFVDHT*KNVQKHCSTEK 654
           N WF +  E      +P N     +  KN  K CSTEK
Sbjct: 423 NPWFVEFWEHHFQCRYP-NASVTPYN-KNYTKFCSTEK 458


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 520 FSVNHQQIVNATNKQIVNFSQYCNFCTF*AIIY 422
           F+     IV+    +  NF  YC F     I+Y
Sbjct: 127 FATTSTTIVSGAMAERCNFKAYCLFSFLNTIVY 159


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 353 KIVSYSLSMYCNLFSIN 303
           ++ S     YCNLFS++
Sbjct: 531 RVASVRAETYCNLFSLS 547


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 353 KIVSYSLSMYCNLFSIN 303
           ++ S     YCNLFS++
Sbjct: 499 RVASVRAETYCNLFSLS 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,656
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)