Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0436
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    28   1.0  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    27   3.2  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   7.4  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   9.7  
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    25   9.7  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   9.7  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
 Frame = +3

Query: 27  KGSAPLAIGLSITACHAAVIPFTGSSMNPARTFGPALV---IG---------NWTSQWVY 170
           +G     +GL I A   A+   T  ++NPAR  GP +    IG         +W   W  
Sbjct: 474 QGMTAFIVGLLIAAIGMALGYQTSFTLNPARDLGPRMFAWWIGYGPHSFHLYHWWWTWGA 533

Query: 171 WXXXXXXXXIAGLLYKFVL 227
           W          GL+Y  V+
Sbjct: 534 WGGTIGGGIAGGLIYDLVI 552


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 19  MTSRVPLPWLSDSASPPATLLSYLSRDPA*TRP 117
           +TS  P+P LS+    PAT+  ++S   A T P
Sbjct: 249 LTSTPPIPPLSEPKHSPATVNEHISPPSALTNP 281


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 553 LAFASHIAFYYSLIPCFCKKET*PPLKYFRTAR 455
           LAF  H+ +Y SL    CK E     +YF +++
Sbjct: 91  LAFTRHLKYYLSLYLPSCKFEICSTNQYFSSSK 123


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 349 NIYNTYVLLEPAMSQAPHRLASCQNRPFA*RIRF 450
           N Y T   L P + Q+PH +A  +N  +   +RF
Sbjct: 110 NRYITRCALHPVLHQSPHFIAFLENPNWNNYVRF 143


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 39  PLAIGLSITACHAAVIPFTGSSMNPARTFGPALVI 143
           P+ +   + AC   V P TG+ +    TF  A+ I
Sbjct: 241 PIHLSFDVDACDPIVAPATGTRVPGGLTFREAMYI 275


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 374 WNQRCHKHLTDSLRVKIDRLPDAYDFESC 460
           WN  CH HL   +  +   + D   F+ C
Sbjct: 270 WNHLCHGHLVMCMGYRRHAMLDENTFDDC 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,938
Number of Sequences: 5004
Number of extensions: 51791
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)