Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0436
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)               66   3e-11
SB_22077| Best HMM Match : MIP (HMM E-Value=0)                         63   2e-10
SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10
SB_45909| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_40051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)                       29   4.5  

>SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)
          Length = 365

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +3

Query: 6   DPQRNDLKG-SAPLAIGLSITACHAAVIPFTGSSMNPARTFGPALVIGNWTSQWVYWXXX 182
           D  R  ++G   PL+IG+ +    +  IP +G SMNPAR+FGPA+V+ +W   W+YW   
Sbjct: 242 DSDRQHMRGYGPPLSIGIVVFINLSLTIPISGGSMNPARSFGPAVVMNSWKDHWMYWIGP 301

Query: 183 XXXXXIAGLLYKFV 224
                +A L Y  V
Sbjct: 302 IAGSCLASLCYHHV 315


>SB_22077| Best HMM Match : MIP (HMM E-Value=0)
          Length = 374

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 25/50 (50%), Positives = 32/50 (64%)
 Frame = +3

Query: 90  FTGSSMNPARTFGPALVIGNWTSQWVYWXXXXXXXXIAGLLYKFVLRIKK 239
           FTG  +NPAR+FGPA+++  WT  WVYW        +A LLY FV R +K
Sbjct: 307 FTGCGINPARSFGPAVIMNIWTDHWVYWAGPVAGAILASLLYHFVFRARK 356


>SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = +3

Query: 12  QRNDLKG-SAPLAIGLSITACHAAVIPFTGSSMNPARTFGPALVIGNWTSQWVY 170
           +R  LKG     A+G  +  CH A IPFTG SMNPAR+ GPA+V+ +W   W++
Sbjct: 208 ERKALKGYEKAAAVGFCVFICHMAGIPFTGCSMNPARSLGPAVVMDHWRHHWLF 261


>SB_45909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 27  KGSAPLAIGLSITACHAAVIPFTGSSMNPARTFGPAL 137
           KG+AP+ IGL++     A     G ++NPAR  GP L
Sbjct: 107 KGTAPILIGLTVFCIGTAFGFNCGYAINPARDLGPRL 143


>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 137 QGWAECSGRVHAGSRERYDSSVAGGDAESDSQGS 36
           Q W+ C+     G +++Y+S +A GDA S S G+
Sbjct: 274 QEWSLCTKTCGGGEKQKYESELATGDA-SCSDGT 306


>SB_40051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 1  GATRNVMTSRVPLPWLSDSA 60
          GA +N+M S  PLPW+ D++
Sbjct: 13 GAVKNIMLSGGPLPWILDTS 32


>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 446

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 137 QGWAECSGRVHAGSRERYDSSVAGGDAESDSQGS 36
           Q W+ C+     G +++Y+S +A GDA S S G+
Sbjct: 189 QEWSLCTKTCGGGEKQKYESELATGDA-SCSDGT 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,336,186
Number of Sequences: 59808
Number of extensions: 390242
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)