Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0434
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 66 3e-11
07_03_0571 - 19602755-19603831 62 5e-10
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 31 0.63
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 30 1.5
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674... 30 1.9
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 3.4
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +3
Query: 159 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 338
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 339 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 509
K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 510 HIISVANEIGRLP 548
+I +E+ + P
Sbjct: 176 NIEMTVSELQKNP 188
>07_03_0571 - 19602755-19603831
Length = 358
Score = 61.7 bits (143), Expect = 5e-10
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Frame = +3
Query: 153 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 329
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 330 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGD 473
ED K V +T +RGLCG+ + V K R+ E ++ V+ VG
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156
Query: 474 KSRGILQR 497
K R
Sbjct: 157 KGNAYFIR 164
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 31.5 bits (68), Expect = 0.63
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -3
Query: 545 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVR 366
E ++ SN ++ L ++ D S + LDVL + VAD + + +A+ +
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164
Query: 365 GHSNKQLLGVIFGRCNLSP 309
+ LG I G C SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 30.3 bits (65), Expect = 1.5
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Frame = +3
Query: 321 TPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRL 500
T PED P L SD L G++ T +S + L++ + + + G L L
Sbjct: 120 TIPEDLPVTLQHFFMSDNQLTGSIPTSLSML--QSLTDMSLNDNHLDGKLPDAFGSLTGL 177
Query: 501 YGKHIISVANEIGRLPPTFLDASQLALL--SSPRDTSLVPER--SFTTSSSLWSRTPS 662
I S N G LPP+ S L L +P +TS+ P S T + S ++TPS
Sbjct: 178 VNFDISS-NNFSGSLPPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPTGSTPTQTPS 234
>02_02_0097 -
6746934-6747005,6747372-6748325,6748421-6748435,
6748592-6748984
Length = 477
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +3
Query: 519 SVANEIGRLPPTFLDASQLALLSSPRD----TSLVPERSFTTSSSLWSRTPSP 665
S+ E+ +LPPT +S +L+ SP D TSL+ R+ T + S TPSP
Sbjct: 185 SLLEELLQLPPTRPSSSSSSLVGSPADGAASTSLL--RTMTPMMASSSATPSP 235
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 436 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 311
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,204,778
Number of Sequences: 37544
Number of extensions: 487573
Number of successful extensions: 1393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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