Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0434
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   7e-37
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   4.5  
SB_42448| Best HMM Match : Dynamin_N (HMM E-Value=2.5)                 28   6.0  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   28   6.0  
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)                        28   7.9  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  151 bits (365), Expect = 7e-37
 Identities = 65/138 (47%), Positives = 102/138 (73%)
 Frame = +3

Query: 165 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPK 344
           +S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA   Y++ E+    +DPK
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 345 QLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISV 524
            L V ++SDRGLCG +H+G++K ++  ++   + N+ ++  GDK++ IL R  GK+++  
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMS 181

Query: 525 ANEIGRLPPTFLDASQLA 578
             ++G+ PP F +A+ LA
Sbjct: 182 FMDVGKKPPLFCEATFLA 199



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 545 PTYFLGRKSAGPAILTSGYEFGSGKIIYNKFKSVVSYAQS 664
           P  F         IL +G++F +G + YN F+SVVS+  S
Sbjct: 189 PPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRAS 228


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +3

Query: 567  SQLALLSSPRDTSLVPERSFTTSSSLWSRTPSP 665
            SQL+ +SSPR +SL P R+  T  SL  R+ SP
Sbjct: 3012 SQLSNVSSPRRSSLTPRRNSGTPESL-DRSMSP 3043


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 227 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 132
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


>SB_42448| Best HMM Match : Dynamin_N (HMM E-Value=2.5)
          Length = 412

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
 Frame = +3

Query: 285 EGAVQFYERAEVTPPEDDPKQLFVAMTSDRG--LCGAVHTGVSKVIRNRLSEPGAENIKV 458
           E A +  ER +V         L    T ++     G VH  +S +IRN+        +K+
Sbjct: 65  ESASRTPERQDVQEKSSSKFDLATPRTPEKQDRTIGYVHE-LSDIIRNKADTHDYCTLKL 123

Query: 459 ICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLD---ASQLALLSSPRDTSLVPERSFT 629
              G+K    L    GK  +  +NE  R P         + +  ++SP D  L  E  F+
Sbjct: 124 QTSGEKLEDALLYSPGKRKLLASNEKSRTPVKLTKLAFTNDMTHVTSPEDFQL-KEEDFS 182

Query: 630 TSSSL 644
           T  ++
Sbjct: 183 TIGNI 187


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 533 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSN 354
           LI N  DV      +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+
Sbjct: 62  LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120

Query: 353 KQ 348
            Q
Sbjct: 121 SQ 122


>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 RAEVTPPEDDPKQLFVAMTSDRGLCG 386
           RA  TPPE   K   + + S  GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288


>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
          Length = 215

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 74  NVGTLRTGCRHPSRGGGLP 130
           N+ TL TG R P  GGG+P
Sbjct: 26  NLNTLPTGARQPVPGGGVP 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,002,166
Number of Sequences: 59808
Number of extensions: 552229
Number of successful extensions: 1419
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)