Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0433
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38840.1 68415.m04772 guanylate-binding family protein simila... 46 2e-05
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 34 0.11
At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase... 29 2.4
At4g11060.1 68417.m01797 single-strand-binding family protein co... 28 5.5
At3g08670.1 68416.m01007 expressed protein 28 5.5
At5g46560.1 68418.m05733 expressed protein 28 7.2
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 7.2
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 7.2
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 27 9.5
>At2g38840.1 68415.m04772 guanylate-binding family protein similar
to SP|Q01514 Interferon-induced guanylate-binding
protein 1 (Guanine nucleotide-binding protein 1)
(Interferon-gamma inducible protein MAG-1) {Mus
musculus}; contains Pfam profile PF02263:
Guanylate-binding protein, N-terminal domain
Length = 679
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 44 EGFKWRGGSERETTGLLLWSQPFKATLANGEKVVIFLMDTQGTFDS--QSTVRDNATVFA 217
EGF + +T G+ +W P + + +G K + +DT+G F+S +S V D+ +FA
Sbjct: 87 EGFGVGHMRDTKTKGIWVWGTPLELEI-DGVKTSVIYLDTEG-FESVGKSNVYDDR-IFA 143
Query: 218 LSTLISSVQIYNLSQNI 268
L+T++SSV IYNL + +
Sbjct: 144 LATVMSSVLIYNLPETV 160
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 47 GFKWRGGSERETTGLLLWSQPFKATLANGEKVVIFLMDTQG--TFDSQSTVRDNATVFAL 220
GF+ + T GL LWS P K T +G + + L+D++G +D D A++ L
Sbjct: 96 GFQVASTHKPCTKGLWLWSSPIKRTALDGTEYNLLLLDSEGIDAYDQTMGGIDEASLDRL 155
Query: 221 S 223
S
Sbjct: 156 S 156
>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative (DEF) (CLA1) identical
to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
synthase, chloroplast precursor (EC 4.1.3.37)
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
(deficient in photosynthesis) protein [Arabidopsis
thaliana] GI:1399261
Length = 717
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 262 LRQVVNLNGRYQRGESEH-CGVVSHSGLTVERSL 164
+RQ L+G +RGESEH C HS T+ L
Sbjct: 164 MRQTNGLSGFTKRGESEHDCFGTGHSSTTISAGL 197
>At4g11060.1 68417.m01797 single-strand-binding family protein
contains Pfam domain PF00436: Single-strand binding
protein family
Length = 201
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 35 EPLEGFKWRGGSERETTGLLLWSQPFKATLANGEKVVIFLMDTQGTFDSQ 184
+P +G+ +RG G + P + L NG V IF + T G FD +
Sbjct: 61 DPRKGWGFRGVHRAIICGKV-GQAPLQKILRNGRTVTIFTVGTGGMFDQR 109
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 388 VRPSVWRSGRSTASEETAPDS*RTASRASEPQRVR--NKDI**DRLLPDASSGP 543
+RPS S S+++ + P +ASR+S P R+R + D+ P SS P
Sbjct: 191 IRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRP 244
>At5g46560.1 68418.m05733 expressed protein
Length = 378
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 96 SSKPVVSLSDPPRHLKPSKGSSST 25
SS P+ S+ +PP+ L PSKG T
Sbjct: 24 SSSPIRSMLEPPQSLFPSKGEFFT 47
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 99 HSSKPVVSLSDPPRHLKPSKG-SSSTPIHSPP 7
HS P V PP H P S P+HSPP
Sbjct: 654 HSPPPPVFSPPPPMHSPPPPVYSPPPPVHSPP 685
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 99 HSSKPVVSLSDPPRHLKPSK-GSSSTPIHSPP 7
HS P V PP H P S P+HSPP
Sbjct: 690 HSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPP 721
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 99 HSSKPVVSLSDPPRHLKPSK-GSSSTPIHSPP 7
HS P V PP H P S P+HSPP
Sbjct: 697 HSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPP 728
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 99 HSSKPVVSLSDPPRHLKPSK-GSSSTPIHSPP 7
HS P V PP H P S P+HSPP
Sbjct: 772 HSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPP 803
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 99 HSSKPVVSLSDPPRHLKPSK-GSSSTPIHSPP 7
HS P V PP H P S P+HSPP
Sbjct: 543 HSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPP 574
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 99 HSSKPVVSLSDPPRHLKPSK-GSSSTPIHSPP 7
HS P V PP H P S P+HSPP
Sbjct: 550 HSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPP 581
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = -1
Query: 141 TFSPFAKVALKGCDHSSKPVVSLS---DPPRHLKPSKGSSSTPIHSPP 7
T SP G HS K ++S PP + P GS +P SPP
Sbjct: 171 TTSPPGSTTPPGGAHSPKSSSAVSPATSPPGSMAPKSGSPVSPTTSPP 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,544
Number of Sequences: 28952
Number of extensions: 329905
Number of successful extensions: 1175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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