Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0430
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    28   1.8  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    26   5.4  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 51  KWHKF-SKYKRTHRKYERFGLEDVFTFCDTQIFVGYISPGKGLSFSGTSKKEMYYSIQK 224
           K+H+F +K K + +KYE+  + D  +  +T+     +SP   +  SG++ K+   S +K
Sbjct: 539 KFHRFRTKSKISKKKYEKMEV-DYTSSSETESDASILSPSAAIPKSGSAIKDELISPKK 596


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -2

Query: 341 RKHSPI--KTEILRGKGKGFLRF--FYFKTRNVTYLYLSP 234
           +KHS     T I  G G G   F  +YFK      LYLSP
Sbjct: 217 KKHSTYFRNTFIAYGLGLGVTNFALYYFKAAQPALLYLSP 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,694
Number of Sequences: 5004
Number of extensions: 53079
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)