Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0429
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 28 1.1
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 28 1.5
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 2.0
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.0
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.6
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 27 2.6
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 27 3.5
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 4.6
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 4.6
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 6.0
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 8.0
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 491 EYSGRIPGSLRRARSRPRPETEGSYYGGALRHHAR--PGLHYA*GYMSDSLR 640
E+ GR+ + RSRP T G Y G R ++R P + GY ++ R
Sbjct: 166 EFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNNYR 217
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 279 DTTEMPFVFWLGPRPILFISDPEDVKGVNNAFIEKPHYYSFAKV 410
D + P + P P SDP G +N+ ++ P Y++ + V
Sbjct: 261 DQSNTPVIKAPAPIPFSVSSDPPSTMGRSNSAVQSPSYFAHSLV 304
>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 242
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 499 WKDTRKSSQGAQPTXXXXXXXXXXXXXXTSCTTWPTLRLRLYVRQPSVFRRYSESI-VTK 675
W D K + P+ S T P+LR + + P+ R+ SE++ +T+
Sbjct: 13 WNDLEKGCLHSCPSYSVNNHVNNPIVKQNSTLTQPSLRKKNTMAAPARLRKRSENVRLTQ 72
Query: 676 EYYDAFH 696
Y FH
Sbjct: 73 ARYAIFH 79
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 499 WKDTRKSSQGAQPTXXXXXXXXXXXXXXTSCTTWPTLRLRLYVRQPSVFRRYSESI-VTK 675
W D K + P+ S T P+LR + + P+ R+ SE++ +T+
Sbjct: 13 WNDLEKGCLHSCPSYSVNNHVNNPIVKQNSTLTQPSLRKKNTMAAPARLRKRSENVRLTQ 72
Query: 676 EYYDAFH 696
Y FH
Sbjct: 73 ARYAIFH 79
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 177 LPSFPQLPLLGNIHQIPRNSINLFQFLEKIAVTCDTTE-MPFVFWLGPR 320
L FP L L N + + I+L LE + V CD E VF PR
Sbjct: 267 LCEFPDLSLKINEDNVYASQIHLVDILEILTVHCDLEESFSIVFSTQPR 315
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 587 DVEGLLRSTSLQSLDEVGCAPCEDFLVSFHYTRRECARQLLDAIFPNFRW-SHYQTVSK 414
D E S + DE C D+L + Y ++ + + + F+W Y+ +SK
Sbjct: 383 DAETSNNSIMIMCADERTCLQLRDYLSTVTYDNKDSLKNMNSKLVDYFQWREQYRKMSK 441
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 629 LTYSLKRSVGQVVHDVEGLLRSTSLQSLDEVGCAPCEDFLVSFHYTRRECARQL 468
++YSL H+ GLL + + E G PC ++ Y+R E A ++
Sbjct: 132 ISYSLTTIFTGFCHNFGGLLAARLVLGFCEAGLFPCLALYLTMIYSRVELAPRI 185
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 189 PQLPLLGNIHQIPRNSINLFQFLEKIAVTCDTTEMPFVFWLGPR 320
P + LGN+ S + K A++C + E+P++ WL R
Sbjct: 81 PSVDRLGNVLGYDIPSRRRRSVVSKEALSCISLEIPYIKWLKKR 124
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 476 GHIHAEYSGRIPGSLRRARSRPRPETEGSYYGGALRHH 589
G Y GR PG R R R R + G GG H
Sbjct: 433 GSSRGGYHGRNPGGPNRQRYRGRRDGRGGNTGGGHSFH 470
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 6.0
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +1
Query: 277 VTQQRCRLFFGW 312
++QQRC +F+GW
Sbjct: 320 ISQQRCDMFYGW 331
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 497 YTRRECARQLLDAIFPNFR-WSHYQTVSKPDLRETIVMWFFYERVVHTLHIL 345
YT EC + +L AIF +FR + + + ++ +F Y + H++
Sbjct: 164 YTGAECVQTILYAIFKSFRSYKNRLPADAGITSDFLISYFVYWVISFPFHLI 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,518
Number of Sequences: 5004
Number of extensions: 61063
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -