Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0428
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.62 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   7.6  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 183 SEYFYFLDSVKVTSNLYAVGTAPLAANVGKRSNSMKIL--VNSNAIEKVKKLAL 338
           S  FY+L SVK    L   GT PL  NV +  N ++ L  +  NA E  K+ ++
Sbjct: 699 SSLFYYLSSVKSDFKLLLTGT-PLQNNVRELFNLLQFLNPMKINAAELEKRYSI 751


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 156 NNTFNLYA*SEYFYFLDSVKVTSNLYAVGTAPLAANVGKRSNSMKILVNSNAIEKVKKLA 335
           + T +  + +EY     +  V+S   +  T  LAAN G  SNS+  L N  +   V   A
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSL-NLESTSSVTSTA 859

Query: 336 LSTLPLT 356
            +T  +T
Sbjct: 860 YTTDSVT 866


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 195 YFLDSVKVTSNLYAVGTAPLAANVGKRSNSMKILVNSNAIEKVK 326
           Y+LDS+K   NLY      L+ ++   S   K+LV  +A + VK
Sbjct: 561 YYLDSLKFFLNLYGHKLPVLSMDI---SYDSKLLVTCSADKNVK 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,313
Number of Sequences: 5004
Number of extensions: 50335
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)