Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0428
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57149| Best HMM Match : UPF0016 (HMM E-Value=7.7e-29)               28   8.0  
SB_49311| Best HMM Match : Transposase_11 (HMM E-Value=0.27)           28   8.0  
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_57149| Best HMM Match : UPF0016 (HMM E-Value=7.7e-29)
          Length = 157

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 489 LQVGFVTVLVAYLSDKSWVIVNNFTGDFVKTAMFKYF 599
           + +GF+T+L A L   + VI   FT  ++ TA+F +F
Sbjct: 89  MALGFMTILSAVLGYATTVIPRKFT-LYISTALFVFF 124


>SB_49311| Best HMM Match : Transposase_11 (HMM E-Value=0.27)
          Length = 357

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 252 GALFQLHTNWRLLLRYRESKNTRTKHT 172
           GA  QL   WR+LLR  E  N  TK T
Sbjct: 320 GAYGQLKGRWRVLLRRCECSNNNTKIT 346


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 613  EAGSIKYLNIAVFTKSPVKLLTITQDLSLKYATRTVTNPTCSPGVSLSASLETSI 449
            E  SIK +  AV TK   KL  I +D+     ++    P C PG ++ +  +  I
Sbjct: 1677 EGPSIKIIE-AVKTKDGKKLKEIVRDIEDPIISQPPRAPVCKPGAAVKSKPDAPI 1730


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,396,317
Number of Sequences: 59808
Number of extensions: 357842
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)