Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0428
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.2  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 267 GKRSNSMKILVNSNAIE 317
           GKRS S++ L N NAI+
Sbjct: 33  GKRSTSLEELANRNAIQ 49


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 108 LL*GLTMRGLSHCLK*NNTFNLYA*SEYFYFLDSVKVTSNLYAVGTAPLAA 260
           L+ GLT+ G    LK   T NL   S+   ++D+V      YA+G   L A
Sbjct: 250 LIRGLTLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVA 300


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 108 LL*GLTMRGLSHCLK*NNTFNLYA*SEYFYFLDSVKVTSNLYAVGTAPLAA 260
           L+ GLT+ G    LK   T NL   S+   ++D+V      YA+G   L A
Sbjct: 303 LIRGLTLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVA 353


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 587 HSSFHEVSREIINYYPG 537
           H SF    R I NYY G
Sbjct: 539 HDSFQAALRSIENYYSG 555


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 587 HSSFHEVSREIINYYPG 537
           H SF    R I NYY G
Sbjct: 577 HDSFQAALRSIENYYSG 593


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 471 QLHWKLPFDTGFKITRRYSN 412
           +  W  P ++GF  T  YSN
Sbjct: 286 EFDWNKPINSGFYSTIMYSN 305


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 471 QLHWKLPFDTGFKITRRYSN 412
           +  W  P ++GF  T  YSN
Sbjct: 286 EFDWNKPINSGFYSTIMYSN 305


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 565 PVKLLTITQDLSLKYATRTVTNPTC 491
           P KLL I+QD  + Y+ R      C
Sbjct: 138 PNKLLRISQDGDILYSMRLTIKAKC 162


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 498 GFVTVLVAYLSDKSWVIVNNF 560
           G+  V+ ++  + SW I +NF
Sbjct: 196 GYALVVYSWAKNDSWRITHNF 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,065
Number of Sequences: 438
Number of extensions: 3554
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)