Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0428
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13400.1 68418.m01543 proton-dependent oligopeptide transport...    28   6.5  
At1g01650.1 68414.m00083 protease-associated (PA) domain-contain...    27   8.6  

>At5g13400.1 68418.m01543 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 624

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 568 SPVKLLTITQDLSLKYATRTVTNPTCSPGVSL 473
           SP KL T+TQ   +K   R +  PTC+  +SL
Sbjct: 359 SPWKLCTVTQVEEVKILIRLIPIPTCTIMLSL 390


>At1g01650.1 68414.m00083 protease-associated (PA) domain-containing
           protein contains protease associated (PA) domain,
           Pfam:PF02225
          Length = 491

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 483 PGLQVGFVTVLVAYLSDKSWVIVNNF 560
           P L+VGFV +  A++ D  WV V+ +
Sbjct: 322 PNLKVGFVLLSCAFMYDIFWVFVSKW 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,387
Number of Sequences: 28952
Number of extensions: 255349
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)