Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0427
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   9.8  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   9.8  

>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 211 QQQRHERVVVSVAGRAHMVG 152
           ++ R E +VVS AGR H  G
Sbjct: 40  KKDREEEIVVSKAGRLHQTG 59


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 144 DINLSKIGIRACGHTSHAMSTDMSVFSSARMALSSARNESKLLRL 10
           D N+S   I   G     +S+  S+FS+A    S  RN+ ++L +
Sbjct: 99  DDNMSLNSIVTMGSILSNVSSVWSIFSTAPSEASETRNKQRILAI 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,118
Number of Sequences: 5004
Number of extensions: 55632
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)