Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0427
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39067| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_26413| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  28   7.9  
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_39067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 25/87 (28%), Positives = 39/87 (44%)
 Frame = -1

Query: 324 FKVK*VLCSVNRVGNDTTNSPGADVEWSRYLNTSLMPCSNSGTSGSSCR*PAARTWWDTL 145
           F+ + +L ++ R  N  T +P    +W R++ T L  C N     + CR         T 
Sbjct: 206 FRTRLLLQALQR--NIGTITPAKCAQWYRFMQTYLPRCLN---GANDCRFLRLNV---TG 257

Query: 144 DINLSKIGIRACGHTSHAMSTDMSVFS 64
           D+N   I I  C H +    T M+V+S
Sbjct: 258 DVN---IAIEICVHANECFMTKMNVYS 281


>SB_26413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 447 THCLTTFGITTSQEHIKTLQLGGFDSWSSYQAPFTCRASRRFKVK 313
           THCLT +     +EH+ ++ +       +    F C AS    V+
Sbjct: 45  THCLTGWNEEADKEHLASVHIKSTKKGRATSIEFRCHASENHNVR 89


>SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = -1

Query: 525 IDTPIIIDSASRAITLYSVYWKFYM*THC-LTTFGITTSQEHIKTLQLGGFDSWSSYQAP 349
           ID P     A+R +  +    K     HC  + F     Q HIKT+  G    W S +  
Sbjct: 192 IDLPSTSKLANRVVKRHRGEHKPEKCDHCGRSFFKPGVLQRHIKTIHSGDKPEWQSNEKL 251

Query: 348 FTC-RASRRFKVK 313
           F C +  + FK +
Sbjct: 252 FKCDKCDKDFKTE 264


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 328 PGRAASKWCLITGPAVKTSELECLY 402
           PG   SK C   G  VKT EL CLY
Sbjct: 365 PGHGCSKSC---GDGVKTRELRCLY 386


>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 35  LAELSAIRAEEKTDMSVDMACDVCPHARMPILDKLISS---VSHHVRAAGYRHDDPLV 199
           + + +++ +EE T+++            +P +DK +++   V  H R+ G R+ DP++
Sbjct: 187 IEQAASVVSEENTELACSFIQKTAVEKVLPEMDKRLATEFDVRRHARSEGRRYCDPVI 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,468,878
Number of Sequences: 59808
Number of extensions: 446850
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)