Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0427
         (819 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa...    29   4.9  
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa...    29   4.9  

>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 11  NLNNLDSFLAELSAIRAEEKTDMSVDMACDVCPHARMPIL---DKLISSVSHHVRAAGYR 181
           ++ N+ SFL   S+    +  DMS+DM  D C      ++   +   SS+   V+AAG  
Sbjct: 129 HIRNVPSFLRGSSSNPMPQHVDMSMDMDSDNCNAQTSGVVIRHNSYGSSLGSSVQAAGES 188

Query: 182 HDDPLVP 202
              P  P
Sbjct: 189 SSGPASP 195


>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 11  NLNNLDSFLAELSAIRAEEKTDMSVDMACDVCPHARMPIL---DKLISSVSHHVRAAGYR 181
           ++ N+ SFL   S+    +  DMS+DM  D C      ++   +   SS+   V+AAG  
Sbjct: 129 HIRNVPSFLRGSSSNPMPQHVDMSMDMDSDNCNAQTSGVVIRHNSYGSSLGSSVQAAGES 188

Query: 182 HDDPLVP 202
              P  P
Sbjct: 189 SSGPASP 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,348,682
Number of Sequences: 28952
Number of extensions: 288634
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)