Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0426
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    28   1.8  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   3.1  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.4  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/50 (18%), Positives = 26/50 (52%)
 Frame = -1

Query: 274 HQDPDLASGVQNVNALRVGIVTDAKVTWDRLSKLYHLLLGIFKAVSNEID 125
           + +P+    +  +N LR+G +   KV W  ++  + + + +   ++ ++D
Sbjct: 287 YSEPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTVLLLDVLTEKLD 336


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 268 DPDLASGVQNVNALRVGIVTD-AKVTWDRLSKLYHLLLGIFKAVSNEIDGLVFCDGILGT 92
           DP     + NV    V   T      + +++K Y  +LG++KAVS  I  +V   G + T
Sbjct: 682 DPQTVKILANVLKTNVAACTSIGSGFYPQIAKNYVDMLGLYKAVSGLISEVVAAQGNIAT 741


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 581  FKNEIF*IYVSHKYSHNCSITSIKTFLLHLTEMSY 477
            FK ++   +   +++ N +     TF+LHL E SY
Sbjct: 1823 FKGQLTITHCLERFALNLNERQASTFMLHLIEQSY 1857


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 21  PSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPSI 131
           P    S+ SQ       +TPS+P  P+ P    +PS+
Sbjct: 493 PERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSV 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,361
Number of Sequences: 5004
Number of extensions: 53619
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)