Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0426
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   3e-16
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_17577| Best HMM Match : fn3 (HMM E-Value=0)                         29   3.3  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 36/56 (64%), Positives = 45/56 (80%)
 Frame = +2

Query: 2   GAGLLSSFGELQYCLSDKPELREFDPESTGGTKYPITEYQPVYFVANSFEDAQEKM 169
           GAGLLSSFGELQYCL+D+P+    +PE T   KYPIT+YQPVYF+A+SF  A+ K+
Sbjct: 338 GAGLLSSFGELQYCLTDEPKKYPLEPEKTSVQKYPITQYQPVYFIADSFLSARNKV 393


>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 15  CRPSASYSTVSQTNLS*ESLTPSLPGVPS--IPSQNTSPSISLLTALKMP 158
           C+ S+   TVS+ N   ES    +PG P+  IPS    P  S  +AL  P
Sbjct: 464 CQKSSGQETVSRFNCLVESSFFQVPGTPNSPIPSPEPKPGKSQFSALTDP 513


>SB_17577| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1690

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 9   VYCRPSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPSISLLTALKM 155
           VYC   A+Y+ +   N S      +L  VP  P QN   + +  TAL +
Sbjct: 649 VYCVTIAAYNRIGSGNFSEPVCVRTLEDVPDAPLQNIKIAAANSTALSL 697


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 15  CRPSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 128
           C PS   ST S  +      TPS P  PS PS  ++PS
Sbjct: 79  CTPSTP-STPSTPSTPSTPSTPSAPSTPSTPSTPSTPS 115



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 15  CRPSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 128
           C P+   ST S  ++     TPS P  PS PS  ++PS
Sbjct: 274 CTPNTP-STPSTPSMPSTPSTPSTPSTPSTPSTPSAPS 310



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 36  STVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 128
           ST S  +L+    TPS P  PS PS  ++PS
Sbjct: 444 STPSTPSLTHTPSTPSTPSTPSTPSTPSTPS 474



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 15  CRPSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 128
           C P+   ST S  ++     TPS P  PS PS  ++PS
Sbjct: 824 CTPNTP-STPSTPSMPSTPSTPSTPSTPSTPSTPSAPS 860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,296,246
Number of Sequences: 59808
Number of extensions: 379581
Number of successful extensions: 1134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)