Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0426
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...   115   4e-28
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   4.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   4.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score =  115 bits (277), Expect = 4e-28
 Identities = 58/109 (53%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
 Frame = +2

Query: 2   GAGLLSSFGELQYCL-SDKPELREFDPESTGGTKYPITEYQPVYFVANSFEDAQEKMIKF 178
           GAGLLS++GEL + L S K E R F+P+ST   KY   +YQP+YFVA+SFEDA+EK  ++
Sbjct: 397 GAGLLSAYGELLHALTSGKCEHRPFEPKSTAVQKYQDQDYQPIYFVADSFEDAKEKFRRW 456

Query: 179 AQTIPRDFGVRYNPYTQSIDILDSARQIRVLMREVHQEMELLLNAMDKL 325
             T+ R F VRY+PYTQ ++ILDS  ++  LM +V+ EM  L NA++KL
Sbjct: 457 VSTMSRPFEVRYDPYTQRVEILDSVDRLDNLMAQVNTEMTHLTNAVNKL 505


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 601 YNYYINNLRMKFFKFMFHTNIVIIVQLP 518
           YNY  NN     +    + NI+ I Q+P
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNIINIEQIP 123


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 601 YNYYINNLRMKFFKFMFHTNIVIIVQLP 518
           YNY  NN     +    + NI+ I Q+P
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNIINIEQIP 123


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 634 KHTYFIDTKCTYNYYINNLRMKFFKFMFHTNIVIIVQLPQSKLFYY 497
           K++ + +    YN   NN     +K ++   I+ I Q+P     YY
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYY 135


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 634 KHTYFIDTKCTYNYYINNLRMKFFKFMFHTNIVIIVQLPQSKLFYY 497
           K++ + +    YN   NN     +K ++   I+ I Q+P     YY
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYY 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,904
Number of Sequences: 438
Number of extensions: 4215
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)