Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0426
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa...    30   2.1  
At1g59890.1 68414.m06747 paired amphipathic helix repeat-contain...    29   4.7  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    28   6.3  

>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger)
           family protein / pentatricopeptide (PPR)
           repeat-containing protein contains Pfam domains PF01535:
           PPR repeat and PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 1208

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 463 LKLCTNKLCKFRKLEK 416
           L +C + LCKFRKLEK
Sbjct: 16  LNICVDSLCKFRKLEK 31


>At1g59890.1 68414.m06747 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1159

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 170 IKFAQTIPRDFGVRYNPYTQSIDILDSARQIRVLMREVHQEMELLLNAMDKL 325
           I+F   I   FG     Y + +DIL+  R+    + EV+QE+ LL    + L
Sbjct: 131 IEFVNRIKARFGGDDRAYKKFLDILNMYRKETKSINEVYQEVTLLFQDHEDL 182


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 78  PSLPGVPSIPSQNTSPSISLLTALKMP 158
           PSLP +P IP+  T P+I LL     P
Sbjct: 296 PSLPPIPLIPTPPTLPTIPLLPTPPTP 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,839
Number of Sequences: 28952
Number of extensions: 265039
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)