Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0425
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)           184   5e-47
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 102   4e-22
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            75   8e-14
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   8e-05
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)                    33   0.19 
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   31   1.0  
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)                 30   2.3  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)                 28   7.1  
SB_46006| Best HMM Match : MAAL_N (HMM E-Value=3.7)                    28   9.4  
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)              28   9.4  
SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score =  184 bits (449), Expect = 5e-47
 Identities = 85/114 (74%), Positives = 99/114 (86%)
 Frame = -2

Query: 754 QVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRIFHIDEHVGMAVAGLI 575
           QVEYA KAVENSGT I +R KDGVVF VEKL+ SKLYE GANKRIFHID H+GMA+AGLI
Sbjct: 152 QVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKRIFHIDTHIGMAIAGLI 211

Query: 574 SDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSV 413
           +D+RQIV TAR EA+NYRS YGSP+PLKYL  RVS ++HA+TLYSA+RP+GC +
Sbjct: 212 ADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLYSAMRPFGCRI 265



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = -2

Query: 229 IYLVHDELKDKQFELELSWVSKDTKGRHELVPRELATEAENQAK 98
           IY+VHDE+KDK FELE+SW+   T G+HE VP+++A  AE  AK
Sbjct: 265 IYVVHDEVKDKNFELEMSWIGSVTNGKHECVPKDVADAAEKYAK 308


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  102 bits (244), Expect = 4e-22
 Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
 Frame = -2

Query: 754 QVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRIFHIDEHVGMAVAGLI 575
           QVEYA +AV+   T +G+RG + VV  VE+   +KL EP   ++I  +D+HV MA AGL 
Sbjct: 20  QVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKICTLDDHVLMAFAGLT 79

Query: 574 SDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWT 395
           +DAR +V  AR E  +++     PV L+Y+   ++     YT  +  RP+G S ++    
Sbjct: 80  ADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLI-VGF 138

Query: 394 DYEG-PQMYMLDPSG 353
           D++G P++Y  DPSG
Sbjct: 139 DFDGTPRLYQTDPSG 153


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
 Frame = -2

Query: 574 SDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWT 395
           +D+R  V+ AR EA+N++ ++G  +P+  L +R++     YT  + +RP GC +++    
Sbjct: 63  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGID 122

Query: 394 DYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK--LKLGDLTVKELVREAARIIYL 221
           + +GPQ+Y  DP+G    +  C+VG  +  A + +EK   K    T  E V  A   +  
Sbjct: 123 EEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTFNETVETAISCLSS 182

Query: 220 VHDELKDKQFELELSWVSKDTKGRHELVPRELAT 119
           V      K  ELE+  VS D     +L   E+ T
Sbjct: 183 VL-SADFKPSELEVGVVSMDNPRFRKLTEAEIDT 215


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 19/53 (35%), Positives = 34/53 (64%)
 Frame = -2

Query: 577 ISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGC 419
           ++D+R  V+ AR EA+N++ ++G  +P+  L +RV+     YT  + +RP GC
Sbjct: 25  VADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLGC 77


>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
          Length = 492

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 325 VGKAKQAAKTEIEKLKLGDLTVKEL----VREAARIIYLVHDELKDKQFELELSWV 170
           V KAK+AAKT+ E      +  KE+    + E  + I LV+D   DK FE   +W+
Sbjct: 52  VEKAKEAAKTKGEPTIFDKILSKEIPADIIYEDDKGIMLVYDITNDKSFEKHQNWI 107


>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 385 GPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKL--KLGDLTVKELVREAARII 227
           GP ++   PS   F     A+G   Q+A+T +EK     GD   +EL++   + +
Sbjct: 3   GPHIFQTCPSANYFDCKAMAIGARSQSARTYLEKYLDAFGDCEPEELIKHGLKAL 57


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = -2

Query: 724 NSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KRIFHIDEHVGMAVAGLISDARQIVET 548
           N   +I + GK+ V  A ++ +  +      + ++IF + E + + + GL +D + I   
Sbjct: 77  NGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDVQTISSR 136

Query: 547 ARSEASNYRSQYGSPVPLKYLNERVSMYMH 458
            +   + Y  + G P+  K     VS  ++
Sbjct: 137 LKFRLNLYELREGRPIKPKTFLSMVSNLLY 166


>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
          Length = 1012

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 552  STICLASDMSPATAMP-TCSSIWNILLFAPGSYSLDVINFSTANTTPSFPRRPITVPEFS 728
            +T+       P T  P + S+   I    PGS S    + +T  T+P  P+ P T+P   
Sbjct: 871  TTVAPPMTSGPTTTTPISTSAAPEITTANPGSPSTTTKSVTTPQTSPKTPQTPATLPTTQ 930

Query: 729  T 731
            T
Sbjct: 931  T 931


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 433 EQRCIVCMRACTLKLVHLNTS----VVLDCHTEICSLMPLNEQSR 555
           E++C +C   C L  V    S      LDC +E+C+  P ++  R
Sbjct: 690 ERQCQICKTTCFLSAVTCKCSEERLTCLDCASELCACRPSDKTLR 734


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 436 VRPYGCSVVMGTWTDYEGPQMYMLDPS 356
           VRP+G S+++  W D + P ++  DPS
Sbjct: 3   VRPFGVSLLVAGWDD-DRPYLFQCDPS 28


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = -2

Query: 211  ELKDKQFELE----LSWVSKDTKGRHELVPRELATEAENQAK 98
            +LK+K F+LE    L  +++     HEL+ R  +TE ENQAK
Sbjct: 1398 DLKEK-FDLEEKALLDKLAEKENSEHELMQRIESTEQENQAK 1438


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 487 LNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYML 365
           + E+ S Y+ AY L   +     + ++GTW+D  G +  ML
Sbjct: 77  VQEKASQYILAYNLALQLPAVLTACLLGTWSDKNGRKPLML 117


>SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)
          Length = 1347

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
 Frame = -2

Query: 718 GTVIGLRGKDGVVFAVEKLITSKLYEPGAN-------KRIFHIDEHVGMAVAGLISDARQ 560
           G +  L  K+GV  +  +L+T++L E G          R+  ++      + G ISD   
Sbjct: 454 GAMTDLSAKNGVTRSAYELVTNRLPELGDGVTDHCVLPRVSQVERAENFLMTG-ISDENG 512

Query: 559 IVETARSEASNYRSQYGSPVPLKYLNERVSMYMHA 455
           +   A    +N  S+ G  V    L  RVS   HA
Sbjct: 513 VTLPAYELVTNRVSELGDNVTDHCLMPRVSQVEHA 547


>SB_46006| Best HMM Match : MAAL_N (HMM E-Value=3.7)
          Length = 260

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 408 WAHGQTMKALRCIC*IP 358
           WA G+T +A RC+C +P
Sbjct: 16  WAGGRTARARRCVCVLP 32


>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 725

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 565 RQIVETARSEASNYRSQYGSPVPLK 491
           R+IV    +EA  YRS+   PVPLK
Sbjct: 4   RRIVMADAAEAEKYRSKNAYPVPLK 28


>SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -2

Query: 577 ISDARQIVETARSEASNYRSQYGS--PVPLKYLNERVSMYMH--AYTLYSAVRPY 425
           I DA Q  E  + +A  + +++GS   V L Y  ERV+ YMH  AY +   +R Y
Sbjct: 401 IEDAMQWDE--KEKAKEWITKFGSLGDVRLGYKKERVTCYMHVAAYHVPPMIRRY 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,221,863
Number of Sequences: 59808
Number of extensions: 447428
Number of successful extensions: 1277
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)