Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0424
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.2  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   5.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.2  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 592 VSKKFLSLSCTYISTYIILKMFIIDMIYVLVIPK 491
           V +++ SL CT I  Y+I K F ++ ++ LVI K
Sbjct: 744 VFRRYSSLDCTSIVEYVI-KQFKVNQMFDLVILK 776


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/43 (20%), Positives = 25/43 (58%)
 Frame = -1

Query: 610 FYSRFLVSKKFLSLSCTYISTYIILKMFIIDMIYVLVIPKLYM 482
           +Y   L+ K +L L C +++  ++  M ++++  + + PK ++
Sbjct: 189 YYIMGLLFKLYLRLDCVHLTNNVLRAMKVVELPDISLFPKSHV 231


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 221  FKNEIF*IYVSHKYSHNCSITSIKTFLLHLTEMSY 117
            FK ++   +   +++ N +     TF+LHL E SY
Sbjct: 1823 FKGQLTITHCLERFALNLNERQASTFMLHLIEQSY 1857


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 608 LFQISCF*KVSFFKLYLHIYIYYLENVYNRYDIRARDTQII 486
           LFQ++C   V  F++ + + I +L N+   Y   + D  ++
Sbjct: 364 LFQLTCSDVVERFQITIMVIIIFLRNLAELYTTSSLDQPLL 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,103
Number of Sequences: 5004
Number of extensions: 48680
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)