Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0424
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   4.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   4.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.2  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 241 YNYYINNLRMKFFKFMFHTNIVIIVQLP 158
           YNY  NN     +    + NI+ I Q+P
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNIINIEQIP 123


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 241 YNYYINNLRMKFFKFMFHTNIVIIVQLP 158
           YNY  NN     +    + NI+ I Q+P
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNIINIEQIP 123


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 274 KHTYFIDTKCTYNYYINNLRMKFFKFMFHTNIVIIVQLPQSKLFYY 137
           K++ + +    YN   NN     +K ++   I+ I Q+P     YY
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYY 135


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 274 KHTYFIDTKCTYNYYINNLRMKFFKFMFHTNIVIIVQLPQSKLFYY 137
           K++ + +    YN   NN     +K ++   I+ I Q+P     YY
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYY 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,257
Number of Sequences: 438
Number of extensions: 3699
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)