Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0423
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37220.1 68418.m04470 zinc finger (C3HC4-type RING finger) fa...    29   3.5  
At4g17380.1 68417.m02605 DNA mismatch repair MutS family protein...    28   8.0  
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein...    28   8.0  

>At5g37220.1 68418.m04470 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 214

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 279 LSEMSLKPNRLSPLYILHILQ 217
           +S + LKP+  SPLYI H+LQ
Sbjct: 56  VSPIKLKPHCFSPLYISHLLQ 76


>At4g17380.1 68417.m02605 DNA mismatch repair MutS family protein
           similar to SP|O15457 MutS protein homolog 4 from {Homo
           sapiens}, from [Mus musculus] GI:16416651; contains Pfam
           profile PF00488: MutS domain V
          Length = 574

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 766 FSLFNLCRYYYSNNKIIFF*LPNNSVQAF*TNKFKSLNV 650
           F+L NL +  ++N +  FF +P   VQ    NKF  LNV
Sbjct: 246 FNLPNL-KLPFNNRQGFFFRIPQKEVQGKLPNKFTQLNV 283


>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
           protein-related similar to ATP-dependent Clp protease,
           ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
           putida KT2440]; similar to  ClpB protein
           (SP:Q9RA63){Thermus thermophilus}
          Length = 422

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 583 CVTQN--LVPYFFTYNQETKNSVRPDMKVVIQNRLKHTY*EVKDYLTMANCIS 431
           CVT +  L   + + NQE+K +    M V + + L+HTY   KD+ ++   +S
Sbjct: 19  CVTTDFGLGVIYASKNQESKTTREKPMLVTLNSSLEHTY--QKDFKSLREILS 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,672,982
Number of Sequences: 28952
Number of extensions: 237489
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)