Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0422
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    31   0.081
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    24   9.3  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 31.1 bits (67), Expect = 0.081
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 25  PLLDYKKNNTINIYAGRIIDVNLVENRKFLDSLPPTKLFN*ISNPYL*IESFVSIFT-LH 201
           PLL  K+   +++ AGR+ D  ++   K    L P  L    SN Y+  ++  ++   L 
Sbjct: 753 PLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLK 812

Query: 202 SKTTEQILIRLL 237
           SK +E  +I LL
Sbjct: 813 SKMSEADIIALL 824


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 116 IVCHLQNSLIK*VILTYK*KVL*VFSLFIQKLLNRF**DFYAGLLWLA 259
           ++C   + L+K  I T+K K +    +  + L+  F    Y   LW++
Sbjct: 668 LICERISKLLKNFIYTFKEKAIVTLPVITEALIKGFEKTQYGCFLWVS 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,959
Number of Sequences: 5004
Number of extensions: 31586
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)