Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0418
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              31   1.4  
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)               29   5.7  
SB_24423| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 489 VHQLHSLKLRSVYYECFIALLGRRSTCPHLMVSGYRRPWTSAMPGAEPSRCLPLNT-LH- 662
           VHQ HS +  +  +   I L  +   CP +  S  + P         PS CL ++T LH 
Sbjct: 476 VHQYHSPRPSTRLFIDTI-LYDQARACPSIPFSTTKHPPVHRYHSPRPSTCLSIDTILHD 534

Query: 663 KPRVCSKNFFLVTR 704
           + R CS   F +T+
Sbjct: 535 QARACSSPPFSMTK 548


>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 564 TCPHLMVSGYRRPWTSAMPGAEPSRCLPLNTLHKPRVCSKNFFLVT 701
           T P    +   R  +S  P    SRCLPL+        S+ FFL T
Sbjct: 340 TLPKRGTATLPRTSSSGRPSIPTSRCLPLDVTRSYLPISRKFFLAT 385


>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
          Length = 1275

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 455 NEYCFPFTSGFCSRLGFENGLV 390
           +E C P+TSG C+R G E+ +V
Sbjct: 292 SEACHPYTSGRCARHGDESSIV 313


>SB_24423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 783 VIDRFGLVLKHLFLCF*TTSIY-CLSITWLPERNFLNTHEAC 661
           VI  FG+++ +L LCF    IY  + +TW  E + L+  E C
Sbjct: 66  VIFNFGMIMVNLRLCF--FDIYGAMFLTWTSENDDLDQVEWC 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,200,705
Number of Sequences: 59808
Number of extensions: 524238
Number of successful extensions: 959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)