Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0418
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.9  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 465 NQKYSCIFVHQ-LHSLKLRSVYYECFI 542
           + KY  + + + L + +LR+ YY+CFI
Sbjct: 24  SDKYDYVNIDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 465 NQKYSCIFVHQ-LHSLKLRSVYYECFI 542
           + KY  + + + L + +LR+ YY+CFI
Sbjct: 24  SDKYDYVNIDEILANDRLRNQYYDCFI 50


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 572 PPNGEWLPSPMDFSNARGRAE 634
           PP+  W P  + F+NA G  E
Sbjct: 104 PPDKVWKPDIVLFNNADGNYE 124


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 33  SYFMFIYFFKLNY 71
           +YFMF+ FF ++Y
Sbjct: 473 AYFMFLTFFFIHY 485


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 33  SYFMFIYFFKLNY 71
           +YFMF+ FF ++Y
Sbjct: 459 AYFMFLTFFFIHY 471


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 33  SYFMFIYFFKLNY 71
           +YFMF+ FF ++Y
Sbjct: 493 AYFMFLTFFFIHY 505


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 33  SYFMFIYFFKLNY 71
           +YFMF+ FF ++Y
Sbjct: 442 AYFMFLTFFFIHY 454


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 193 NADLQKINQIFIKKLNSRKM 252
           N D +K+NQ+ I+  NS+++
Sbjct: 69  NQDTEKLNQLEIESDNSKEV 88


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 636 GSALPLALLKSMGDGNHSPLGGGMC 562
           G AL   L  ++GD N   L   MC
Sbjct: 610 GDALNANLQAALGDSNMGFLNNSMC 634


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,851
Number of Sequences: 438
Number of extensions: 5425
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)