Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0418
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi...    29   4.6  
At3g04610.1 68416.m00493 KH domain-containing protein similar pu...    28   6.1  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    28   8.1  
At1g67810.1 68414.m07740 Fe-S metabolism associated domain-conta...    28   8.1  

>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 701

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 495 QLHSLKLRSVYYECFIALLGR 557
           ++H +K R+++Y C I LLGR
Sbjct: 454 EVHGIKPRAMHYACMIELLGR 474


>At3g04610.1 68416.m00493 KH domain-containing protein similar
           putative nucleic acid binding protein GB:CAB39665
           [Arabidopsis thaliana]; Pfam HMM hit: KH domain family
           of RNA binding proteins
          Length = 577

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 545 PFRQTKHMPPPNGEWLP 595
           P RQ  HMPPP+  W P
Sbjct: 369 PTRQMDHMPPPHQSWGP 385


>At3g22790.1 68416.m02873 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1694

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +1

Query: 226 IKKLNSR--KMLIVVNIQK*DKVLIKFYEKRTEREKIV--GMCIQRLIII*NNAKCTDVT 393
           ++KL     K+  + N Q  DK  +   EK  E + I+   +C+++L++  +N K  D +
Sbjct: 582 VRKLQDENSKLTELCNHQSDDKDALT--EKLRELDNILRKNVCLEKLLLE-SNTKL-DGS 637

Query: 394 RPFSKPKREQNPDVNGKQYSFVNVTKNIL 480
           R  +K  +E+   + G++Y F+    N+L
Sbjct: 638 REKTKDLQERCESLRGEKYEFIAERANLL 666


>At1g67810.1 68414.m07740 Fe-S metabolism associated
           domain-containing protein contains Pfam PF02657: Fe-S
           metabolism associated domain
          Length = 258

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +1

Query: 301 YEKRTEREKIVGMCIQRLIII*NNAKCTDVTRPFSKPKREQNPDVNGKQYSFVNVTKNIL 480
           ++  ++ E   G C   LI I + AK  +V    S+   E N  V+GK+ S VN   N+L
Sbjct: 140 FKADSDSEISKGFC-SCLIWILDGAKPEEVMGVRSEDLSEMNVGVHGKEQSRVNTWHNVL 198

Query: 481 V 483
           +
Sbjct: 199 M 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,788,410
Number of Sequences: 28952
Number of extensions: 358858
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)