Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0416
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    29   0.47 
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    28   1.4  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   3.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   5.8  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.8  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   7.7  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   7.7  

>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 103 LIPLLKTPINSLKAVW--IAFWIFLSRFASSGLIQFYHLPRSLHLSLK 240
           L+P +KT ++ + A+   + F   LSRF  S  +QFY + +   + LK
Sbjct: 136 LLPHVKTNVSKVYALHPSMQFCTILSRFNGSDCLQFYQISKKAWILLK 183


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 295 KVENEELQAIVEADPSQSTSEIDAGFGVSDKTVLIHLKQIWKGKSKRQS 149
           K  ++  ++ VE DP  S ++      VSD  ++   K++ KGK +R S
Sbjct: 20  KAGSKRRKSSVEDDPDTSQTDGLVELPVSDTPIVKRNKELRKGKGRRSS 68


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 135 FKGGLDCLLDFPFQICFKWINTVLSLTPKPASISEVLCDGSASTIAC 275
           FKG L   L +  Q+    + T+L      A  + + C G +  + C
Sbjct: 367 FKGMLARFLGYTMQLAPYTVETILPYIQSSAEAAALACSGGSDGVTC 413


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 400 HSRCFCSTGAMVELVLVNIPIFHVFHC 480
           HS+C    G ++EL+   + IF V +C
Sbjct: 716 HSKCHRKYGHVIELICTLLLIFVVIYC 742


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 492 AYYRTMENMKYWYIYEHEFYHGTSAAETSRMYGTGVQ 382
           A+ RT E  K W ++    +  TS + ++  YG  +Q
Sbjct: 307 AFSRTKEFTKAWEVFNFMKFTATSISPSAETYGLMIQ 343


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -1

Query: 307 RPETK---VENEELQAIVEADPSQSTSEIDAGFGVSDKTVLIHLKQIWKGKSKRQSKPPL 137
           RP +K   V+     AIVE DP +        F +  K   + +   W     + ++  L
Sbjct: 58  RPNSKGVNVKRSRRNAIVEEDPQEEIFNNLFAFLLDQKVDTMDIAVSWFADYAKDNQSAL 117

Query: 136 KSLLVFLVK 110
            +L+ F++K
Sbjct: 118 ANLINFILK 126


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 91  IGSSLIPLL-KTPINSLKAVWIAFWIFLSRFASSGLIQFYHLPR 219
           IG   IPLL   PI+S   + I FW+ +    S  ++ F+ + R
Sbjct: 501 IGKKPIPLLDPNPISS-TPISITFWVIMFLSVSFTIVTFFSILR 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,608
Number of Sequences: 5004
Number of extensions: 67418
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)